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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP2/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP2/6-311G**
 hartrees
Energy at 0K-398.040359
Energy at 298.15K-398.050506
HF Energy-396.832880
Nuclear repulsion energy326.052535
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3862 3670 73.96      
2 A 3807 3618 85.11      
3 A 3633 3452 5.07      
4 A 3538 3362 1.73      
5 A 3172 3014 18.72      
6 A 3101 2947 11.38      
7 A 3039 2887 50.17      
8 A 1810 1720 211.77      
9 A 1662 1579 35.10      
10 A 1531 1455 3.07      
11 A 1465 1392 41.67      
12 A 1427 1356 2.67      
13 A 1411 1341 55.63      
14 A 1398 1329 21.24      
15 A 1337 1270 8.32      
16 A 1261 1199 9.48      
17 A 1217 1156 3.78      
18 A 1191 1132 188.53      
19 A 1169 1111 59.71      
20 A 1121 1065 92.32      
21 A 1057 1005 44.85      
22 A 1019 968 2.60      
23 A 925 879 172.75      
24 A 830 789 20.39      
25 A 747 710 25.82      
26 A 637 605 100.30      
27 A 584 555 13.84      
28 A 558 530 191.14      
29 A 529 503 14.44      
30 A 445 423 8.03      
31 A 312 297 7.69      
32 A 303 288 14.95      
33 A 263 250 23.88      
34 A 224 213 4.68      
35 A 175 166 2.86      
36 A 36 34 0.71      

Unscaled Zero Point Vibrational Energy (zpe) 25398.4 cm-1
Scaled (by 0.9502) Zero Point Vibrational Energy (zpe) 24133.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/6-311G**
ABC
0.12001 0.07863 0.05126

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/6-311G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.774 -0.549 0.002
O2 2.052 -0.345 -0.370
O3 0.390 -1.558 0.554
C4 -0.085 0.672 -0.311
C5 -1.505 0.445 0.198
O6 -2.111 -0.680 -0.392
N7 0.448 1.917 0.229
H8 2.529 -1.150 -0.130
H9 -0.128 0.759 -1.402
H10 -1.477 0.373 1.295
H11 -2.097 1.323 -0.070
H12 -1.637 -1.435 -0.036
H13 1.352 2.124 -0.176
H14 0.576 1.833 1.232

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34691.21231.52512.49412.91462.49791.85982.12072.75483.42762.56812.74042.6880
O21.34692.25562.36733.68804.17662.83740.96562.65333.96804.48163.86062.57333.0802
O31.21232.25562.43832.78032.81423.49042.28263.07632.78603.85592.11413.87463.4629
C41.52512.36732.43831.52572.43721.45783.19111.09592.14662.12842.63092.04702.0408
C52.49413.68802.78031.52571.40732.44564.35042.13401.10041.09131.89893.33512.7073
O62.91464.17662.81422.43721.40733.69824.67102.64982.08722.02800.96004.46104.0218
N72.49792.83743.49041.45782.44563.69823.72382.08222.68822.63023.95581.01281.0143
H81.85980.96562.28263.19114.35044.67103.72383.51054.51655.24534.17613.47893.8164
H92.12072.65333.07631.09592.13402.64982.08223.51053.04072.44302.99212.35762.9309
H102.75483.96802.78602.14661.10042.08722.68824.51653.04071.77452.25043.63852.5208
H113.42764.48163.85592.12841.09132.02802.63025.24532.44301.77452.79543.54273.0169
H122.56813.86062.11412.63091.89890.96003.95584.17612.99212.25042.79544.64914.1453
H132.74042.57333.87462.04703.33514.46101.01283.47892.35763.63853.54274.64911.6339
H142.68803.08023.46292.04082.70734.02181.01433.81642.93092.52083.01694.14531.6339

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 105.891 C1 C4 C5 109.676
C1 C4 N7 113.716 C1 C4 H9 106.875
O2 C1 O3 123.529 O2 C1 C4 110.879
O3 C1 C4 125.542 C4 C5 O6 112.337
C4 C5 H10 108.571 C4 C5 H11 107.680
C4 N7 H13 110.607 C4 N7 H14 109.991
C5 C4 N7 110.094 C5 C4 H9 107.848
C5 O6 H12 105.098 O6 C5 H10 112.100
O6 C5 H11 107.854 N7 C4 H9 108.415
H10 C5 H11 108.121 H13 N7 H14 107.425
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability