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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HSEh1PBE/6-31G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HSEh1PBE/6-31G
 hartrees
Energy at 0K-411.369059
Energy at 298.15K-411.377083
HF Energy-411.369059
Nuclear repulsion energy410.451691
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/6-31G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3723 3562 95.55      
2 A' 3336 3191 0.14      
3 A' 3280 3138 12.15      
4 A' 3256 3114 8.30      
5 A' 1676 1603 61.07      
6 A' 1630 1560 48.27      
7 A' 1524 1458 40.60      
8 A' 1493 1428 3.09      
9 A' 1454 1391 20.23      
10 A' 1432 1370 26.45      
11 A' 1381 1321 61.67      
12 A' 1333 1275 29.94      
13 A' 1317 1259 5.43      
14 A' 1291 1235 56.36      
15 A' 1214 1162 3.29      
16 A' 1137 1087 7.48      
17 A' 1112 1064 15.79      
18 A' 962 920 0.44      
19 A' 913 873 11.68      
20 A' 812 776 11.91      
21 A' 670 641 0.34      
22 A' 575 550 3.62      
23 A' 446 427 15.30      
24 A" 1005 961 0.77      
25 A" 956 914 18.79      
26 A" 901 862 2.68      
27 A" 825 789 19.98      
28 A" 683 653 171.84      
29 A" 674 645 11.76      
30 A" 633 606 17.24      
31 A" 438 419 0.57      
32 A" 257 246 2.27      
33 A" 236 225 3.54      

Unscaled Zero Point Vibrational Energy (zpe) 21285.4 cm-1
Scaled (by 0.9566) Zero Point Vibrational Energy (zpe) 20361.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/6-31G
ABC
0.13704 0.05785 0.04068

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/6-31G

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.816 -1.269 0.000
C2 -2.128 0.056 0.000
N3 -1.283 1.091 0.000
C4 0.000 0.706 0.000
C5 0.455 -0.628 0.000
C6 -0.527 -1.619 0.000
N7 1.846 -0.679 0.000
C8 2.196 0.591 0.000
N9 1.126 1.479 0.000
H10 -3.182 0.287 0.000
H11 -0.291 -2.676 0.000
H12 3.217 0.928 0.000
H13 1.157 2.484 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36132.42002.68302.36041.33553.70934.42264.02592.07082.07485.49204.7885
C21.36131.33642.22482.67202.31694.04134.35713.55141.07913.29195.41574.0852
N32.42001.33641.33942.44442.81393.59523.51492.43992.06213.89544.50302.8096
C42.68302.22481.33941.40882.38402.30802.19941.36603.20913.39393.22502.1220
C52.36042.67202.44441.40881.39621.39172.12492.21043.75042.18003.16973.1899
C61.33552.31692.81392.38401.39622.55263.50753.51173.26841.08264.52874.4359
N73.70934.04133.59522.30801.39172.55261.31772.27525.12002.92432.11273.2379
C84.42264.35713.51492.19942.12493.50751.31771.39065.38674.10571.07512.1599
N94.02593.55142.43991.36602.21043.51172.27521.39064.46964.38952.16251.0061
H102.07081.07912.06213.20913.75043.26845.12005.38674.46964.13986.43104.8634
H112.07483.29193.89543.39392.18001.08262.92434.10574.38954.13985.02915.3594
H125.49205.41574.50303.22503.16974.52872.11271.07512.16256.43105.02912.5820
H134.78854.08522.80962.12203.18994.43593.23792.15991.00614.86345.35942.5820

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.542 N1 C2 H10 115.627
N1 C6 C5 119.536 N1 C6 H11 117.812
C2 N1 C6 118.433 C2 N3 C4 112.490
N3 C2 H10 116.831 N3 C4 C5 125.591
N3 C4 N9 128.801 C4 C5 C6 116.408
C4 C5 N7 111.003 C4 N9 C8 105.850
C4 N9 H13 126.237 C5 C4 N9 105.608
C5 C6 H11 122.652 C5 N7 C8 103.272
C6 C5 N7 132.589 N7 C8 N9 114.266
N7 C8 H12 123.679 C8 N9 H13 127.912
N9 C8 H12 122.055
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/6-31G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.398      
2 C 0.095      
3 N -0.362      
4 C 0.438      
5 C 0.076      
6 C 0.054      
7 N -0.416      
8 C 0.260      
9 N -0.753      
10 H 0.202      
11 H 0.210      
12 H 0.222      
13 H 0.371      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.259 3.122 0.000 3.854
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.047 6.470 0.000
y 6.470 -47.887 0.000
z 0.000 0.000 -52.057
Traceless
 xyz
x -1.075 6.470 0.000
y 6.470 3.665 0.000
z 0.000 0.000 -2.590
Polar
3z2-r2-5.180
x2-y2-3.160
xy6.470
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.441 1.335 0.000
y 1.335 11.213 0.000
z 0.000 0.000 3.861


<r2> (average value of r2) Å2
<r2> 256.699
(<r2>)1/2 16.022