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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/TZVP
 hartrees
Energy at 0K-412.077572
Energy at 298.15K-412.085406
HF Energy-412.077572
Nuclear repulsion energy413.036227
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3644 3518 92.98      
2 A' 3241 3129 0.34      
3 A' 3184 3074 12.09      
4 A' 3170 3061 12.27      
5 A' 1643 1587 67.99      
6 A' 1607 1551 78.36      
7 A' 1518 1466 27.49      
8 A' 1484 1432 2.50      
9 A' 1426 1377 51.83      
10 A' 1413 1364 23.51      
11 A' 1365 1317 49.46      
12 A' 1311 1266 41.20      
13 A' 1287 1243 2.33      
14 A' 1265 1222 49.77      
15 A' 1205 1164 6.16      
16 A' 1131 1092 7.10      
17 A' 1076 1039 19.53      
18 A' 949 916 0.95      
19 A' 912 881 11.75      
20 A' 808 780 12.34      
21 A' 663 640 0.24      
22 A' 572 552 2.90      
23 A' 447 432 12.98      
24 A" 979 945 0.14      
25 A" 928 895 12.46      
26 A" 872 842 9.00      
27 A" 792 764 8.70      
28 A" 663 640 5.15      
29 A" 617 596 24.70      
30 A" 519 502 96.17      
31 A" 413 399 2.37      
32 A" 242 234 0.43      
33 A" 222 214 4.09      

Unscaled Zero Point Vibrational Energy (zpe) 20783.8 cm-1
Scaled (by 0.9654) Zero Point Vibrational Energy (zpe) 20064.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/TZVP
ABC
0.13867 0.05861 0.04120

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/TZVP

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.814 -1.252 0.000
C2 -2.105 0.067 0.000
N3 -1.271 1.097 0.000
C4 0.000 0.703 0.000
C5 0.450 -0.625 0.000
C6 -0.539 -1.606 0.000
N7 1.832 -0.688 0.000
C8 2.185 0.568 0.000
N9 1.130 1.465 0.000
H10 -3.160 0.306 0.000
H11 -0.313 -2.666 0.000
H12 3.211 0.897 0.000
H13 1.174 2.471 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35162.41112.66702.34891.32353.68934.39424.00692.05922.06245.46574.7745
C21.35161.32512.19912.64692.29254.00884.31983.52471.08143.26925.38094.0663
N32.41111.32511.33042.43362.80033.57903.49642.42912.04813.88314.48642.8050
C42.66702.19911.33041.40152.37112.29962.18961.36353.18483.38353.21712.1230
C52.34892.64692.43361.40151.39291.38372.10612.19833.72762.17913.15333.1798
C61.32352.29252.80032.37111.39292.54243.48543.49593.24471.08394.50894.4229
N73.68934.00883.57902.29961.38372.54241.30422.26445.08972.91782.10103.2266
C84.39424.31983.49642.18962.10613.48541.30421.38545.35194.08641.07742.1555
N94.00693.52472.42911.36352.19833.49592.26441.38544.44424.37642.15711.0068
H102.05921.08142.04813.18483.72763.24475.08975.35194.44424.11626.39864.8451
H112.06243.26923.88313.38352.17911.08392.91784.08644.37644.11625.01155.3484
H125.46575.38094.48643.21713.15334.50892.10101.07742.15716.39865.01152.5743
H134.77454.06632.80502.12303.17984.42293.22662.15551.00684.84515.34842.5743

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.517 N1 C2 H10 115.188
N1 C6 C5 119.684 N1 C6 H11 117.561
C2 N1 C6 117.957 C2 N3 C4 111.814
N3 C2 H10 116.295 N3 C4 C5 125.931
N3 C4 N9 128.763 C4 C5 C6 116.097
C4 C5 N7 111.306 C4 N9 C8 105.599
C4 N9 H13 126.520 C5 C4 N9 105.305
C5 C6 H11 122.755 C5 N7 C8 103.136
C6 C5 N7 132.596 N7 C8 N9 114.653
N7 C8 H12 123.543 C8 N9 H13 127.880
N9 C8 H12 121.804
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.084      
2 C -0.053      
3 N -0.068      
4 C -0.107      
5 C 0.012      
6 C -0.143      
7 N -0.065      
8 C -0.006      
9 N -0.117      
10 H 0.119      
11 H 0.122      
12 H 0.135      
13 H 0.254      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.246 2.978 0.000 3.730
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.313 6.266 0.000
y 6.266 -48.261 0.000
z 0.000 0.000 -52.232
Traceless
 xyz
x -1.066 6.266 0.000
y 6.266 3.512 0.000
z 0.000 0.000 -2.446
Polar
3z2-r2-4.891
x2-y2-3.052
xy6.266
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.838 1.364 0.000
y 1.364 12.483 0.000
z 0.000 0.000 6.167


<r2> (average value of r2) Å2
<r2> 254.092
(<r2>)1/2 15.940