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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HF/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HF/6-31G*
 hartrees
Energy at 0K-396.716090
Energy at 298.15K-396.726500
HF Energy-396.716090
Nuclear repulsion energy328.050266
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 4099 3683 82.33      
2 A 4048 3637 126.20      
3 A 3832 3443 7.19      
4 A 3737 3358 2.57      
5 A 3311 2975 33.44      
6 A 3250 2920 19.46      
7 A 3196 2872 57.23      
8 A 2008 1804 351.70      
9 A 1840 1653 41.89      
10 A 1661 1492 2.25      
11 A 1579 1419 37.73      
12 A 1558 1399 42.31      
13 A 1529 1374 59.52      
14 A 1514 1360 7.39      
15 A 1451 1304 20.45      
16 A 1364 1225 45.76      
17 A 1313 1180 157.43      
18 A 1288 1157 105.89      
19 A 1231 1106 16.00      
20 A 1212 1089 125.32      
21 A 1127 1013 39.51      
22 A 1083 973 0.39      
23 A 965 867 222.55      
24 A 893 803 31.23      
25 A 815 733 36.88      
26 A 671 603 121.73      
27 A 631 567 25.96      
28 A 565 507 164.42      
29 A 539 484 102.29      
30 A 482 433 6.04      
31 A 326 293 10.90      
32 A 317 285 29.81      
33 A 295 265 20.15      
34 A 229 205 1.49      
35 A 179 161 3.88      
36 A 44 39 1.36      

Unscaled Zero Point Vibrational Energy (zpe) 27089.7 cm-1
Scaled (by 0.8985) Zero Point Vibrational Energy (zpe) 24340.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/6-31G*
ABC
0.12052 0.07854 0.05246

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/6-31G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.801 -0.522 0.012
O2 2.057 -0.308 -0.366
O3 0.467 -1.534 0.545
C4 -0.106 0.660 -0.306
C5 -1.528 0.410 0.192
O6 -2.101 -0.724 -0.381
N7 0.390 1.916 0.222
H8 2.574 -1.077 -0.145
H9 -0.138 0.739 -1.387
H10 -1.530 0.350 1.279
H11 -2.132 1.259 -0.093
H12 -1.669 -1.489 -0.024
H13 1.272 2.161 -0.182
H14 0.509 1.878 1.216

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.32811.19201.52352.51542.93592.48151.86422.10452.79323.43322.65352.73042.7008
O21.32812.20452.37023.69814.17842.84090.95282.63704.00044.48033.92352.59683.1105
O31.19202.20452.42212.80822.84783.46632.26383.04432.84193.86842.21133.85063.4774
C41.52352.37022.42211.52702.42901.45003.19781.08472.15322.12322.67242.04132.0439
C52.51543.69812.80821.52701.39422.43834.37632.12981.08821.08011.91723.32302.7109
O62.93594.17842.84782.42901.39423.67934.69442.64742.05732.00430.94864.44274.0162
N72.48152.84093.46631.45002.43833.67933.72362.06192.69432.62453.98711.00041.0022
H81.86420.95282.26383.19784.37634.69443.72363.49204.57275.25424.26503.48983.8534
H92.10452.63703.04431.08472.12982.64742.06193.49203.03312.43383.02842.33672.9138
H102.79324.00042.84192.15321.08822.05732.69434.57273.03311.75232.25773.64242.5491
H113.43324.48033.86842.12321.08012.00432.62455.25422.43381.75232.78813.52223.0112
H122.65353.92352.21132.67241.91720.94863.98714.26503.02842.25772.78814.69014.1974
H132.73042.59683.85062.04133.32304.44271.00043.48982.33673.64243.52224.69011.6174
H142.70083.11053.47742.04392.71094.01621.00223.85342.91382.54913.01124.19741.6174

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.513 C1 C4 C5 111.092
C1 C4 N7 113.114 C1 C4 H9 106.369
O2 C1 O3 121.939 O2 C1 C4 112.257
O3 C1 C4 125.801 C4 C5 O6 112.431
C4 C5 H10 109.699 C4 C5 H11 107.823
C4 N7 H13 111.508 C4 N7 H14 111.611
C5 C4 N7 109.953 C5 C4 H9 108.076
C5 O6 H12 108.330 O6 C5 H10 111.346
O6 C5 H11 107.521 N7 C4 H9 108.007
H10 C5 H11 107.827 H13 N7 H14 107.732
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.759      
2 O -0.703      
3 O -0.583      
4 C -0.110      
5 C 0.028      
6 O -0.757      
7 N -0.840      
8 H 0.470      
9 H 0.220      
10 H 0.145      
11 H 0.195      
12 H 0.469      
13 H 0.364      
14 H 0.343      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.220 0.515 0.731 3.342
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.083 -1.805 -1.588
y -1.805 -44.178 1.911
z -1.588 1.911 -40.212
Traceless
 xyz
x 1.112 -1.805 -1.588
y -1.805 -3.531 1.911
z -1.588 1.911 2.419
Polar
3z2-r24.838
x2-y23.095
xy-1.805
xz-1.588
yz1.911


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 6.593 0.200 -0.201
y 0.200 6.728 -0.244
z -0.201 -0.244 5.339


<r2> (average value of r2) Å2
<r2> 213.611
(<r2>)1/2 14.615