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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B3PW91/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B3PW91/6-311G*
 hartrees
Energy at 0K-398.901233
Energy at 298.15K-398.911274
HF Energy-398.901233
Nuclear repulsion energy326.214703
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3PW91/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3764 3624 46.55      
2 A 3747 3607 52.79      
3 A 3603 3468 1.91      
4 A 3517 3386 0.47      
5 A 3129 3012 23.67      
6 A 3053 2939 16.51      
7 A 2984 2873 63.73      
8 A 1812 1745 274.51      
9 A 1718 1654 41.24      
10 A 1513 1456 2.80      
11 A 1451 1397 52.13      
12 A 1407 1354 4.19      
13 A 1401 1349 26.16      
14 A 1384 1333 39.95      
15 A 1330 1281 7.38      
16 A 1253 1206 17.42      
17 A 1205 1161 45.09      
18 A 1184 1140 197.76      
19 A 1149 1106 30.99      
20 A 1110 1069 114.97      
21 A 1037 999 35.82      
22 A 1004 966 0.08      
23 A 890 857 198.55      
24 A 823 792 32.22      
25 A 750 722 36.65      
26 A 656 632 104.36      
27 A 580 558 21.29      
28 A 567 546 221.28      
29 A 522 503 15.58      
30 A 438 422 8.47      
31 A 305 293 5.65      
32 A 289 279 11.89      
33 A 261 251 33.49      
34 A 219 211 6.02      
35 A 167 161 3.09      
36 A 30 29 0.78      

Unscaled Zero Point Vibrational Energy (zpe) 25126.6 cm-1
Scaled (by 0.9627) Zero Point Vibrational Energy (zpe) 24189.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3PW91/6-311G*
ABC
0.11965 0.07891 0.05128

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3PW91/6-311G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.777 -0.544 -0.001
O2 2.057 -0.347 -0.356
O3 0.401 -1.555 0.541
C4 -0.088 0.676 -0.310
C5 -1.514 0.444 0.187
O6 -2.105 -0.698 -0.378
N7 0.439 1.924 0.226
H8 2.555 -1.141 -0.120
H9 -0.127 0.764 -1.401
H10 -1.508 0.393 1.287
H11 -2.114 1.308 -0.102
H12 -1.652 -1.461 -0.007
H13 1.337 2.147 -0.184
H14 0.563 1.865 1.230

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34281.20751.52672.50192.91022.50081.87932.11852.78543.43452.59602.75432.7136
O21.34282.23742.37653.69764.17642.84780.96672.66393.99454.49423.88802.60093.1042
O31.20752.23742.43752.79112.80373.49332.29043.07122.82803.86502.12693.88663.4926
C41.52672.37652.43751.52812.44121.45613.21261.09602.15562.13252.66552.05152.0512
C52.50193.69762.79111.52811.40412.45064.37752.13331.10071.09101.92013.34152.7243
O62.91024.17642.80372.44121.40413.70204.68772.66382.07772.02470.96244.46914.0337
N72.50082.84783.49331.45612.45063.70203.74002.07632.69472.64623.98521.01191.0136
H81.87930.96672.29043.21264.37754.68773.74003.53054.56505.27214.22003.50663.8500
H92.11852.66393.07121.09602.13332.66382.07633.53053.04512.43573.03672.35282.9344
H102.78543.99452.82802.15561.10072.07772.69474.56503.04511.77002.26573.65172.5421
H113.43454.49423.86502.13251.09102.02472.64625.27212.43571.77002.80943.55213.0414
H122.59603.88802.12692.66551.92010.96243.98524.22003.03672.26572.80944.68834.1834
H132.75432.60093.88662.05153.34154.46911.01193.50662.35283.65173.55214.68831.6360
H142.71363.10423.49262.05122.72434.03371.01363.85002.93442.54213.04144.18341.6360

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.810 C1 C4 C5 109.974
C1 C4 N7 113.923 C1 C4 H9 106.603
O2 C1 O3 122.552 O2 C1 C4 111.669
O3 C1 C4 125.718 C4 C5 O6 112.651
C4 C5 H10 109.084 C4 C5 H11 107.852
C4 N7 H13 111.171 C4 N7 H14 111.038
C5 C4 N7 110.379 C5 C4 H9 107.631
C5 O6 H12 106.973 O6 C5 H10 111.516
O6 C5 H11 107.823 N7 C4 H9 108.057
H10 C5 H11 107.722 H13 N7 H14 107.744
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3PW91/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.460      
2 O -0.513      
3 O -0.367      
4 C -0.243      
5 C -0.197      
6 O -0.562      
7 N -0.739      
8 H 0.408      
9 H 0.260      
10 H 0.188      
11 H 0.238      
12 H 0.404      
13 H 0.341      
14 H 0.323      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.479 0.281 0.765 3.574
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.519 -2.164 -1.198
y -2.164 -44.037 1.468
z -1.198 1.468 -39.794
Traceless
 xyz
x 0.396 -2.164 -1.198
y -2.164 -3.380 1.468
z -1.198 1.468 2.984
Polar
3z2-r25.967
x2-y22.518
xy-2.164
xz-1.198
yz1.468


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.000 0.132 -0.202
y 0.132 7.809 -0.148
z -0.202 -0.148 5.862


<r2> (average value of r2) Å2
<r2> 215.430
(<r2>)1/2 14.678