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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP2=FULL/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP2=FULL/cc-pVDZ
 hartrees
Energy at 0K-397.908216
Energy at 298.15K-397.918394
HF Energy-396.756099
Nuclear repulsion energy325.446970
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2=FULL/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3797 3608 93.73      
2 A 3755 3568 91.43      
3 A 3612 3433 4.14      
4 A 3516 3342 1.02      
5 A 3176 3019 22.14      
6 A 3101 2947 11.49      
7 A 3028 2878 61.24      
8 A 1817 1727 202.65      
9 A 1662 1580 29.99      
10 A 1512 1437 2.48      
11 A 1465 1392 43.04      
12 A 1408 1338 73.08      
13 A 1407 1337 21.68      
14 A 1392 1323 8.50      
15 A 1331 1265 10.21      
16 A 1250 1188 4.94      
17 A 1221 1160 10.94      
18 A 1197 1137 185.68      
19 A 1172 1114 30.58      
20 A 1126 1071 91.32      
21 A 1054 1002 52.02      
22 A 1016 966 3.05      
23 A 941 894 159.68      
24 A 826 785 18.91      
25 A 747 710 30.84      
26 A 655 623 90.57      
27 A 584 555 111.82      
28 A 570 542 70.07      
29 A 541 514 28.14      
30 A 432 411 7.22      
31 A 320 304 6.07      
32 A 313 297 13.68      
33 A 258 245 22.84      
34 A 230 219 7.00      
35 A 174 165 2.29      
36 A 34 33 0.48      

Unscaled Zero Point Vibrational Energy (zpe) 25319.5 cm-1
Scaled (by 0.9504) Zero Point Vibrational Energy (zpe) 24063.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2=FULL/cc-pVDZ
ABC
0.12012 0.07909 0.05048

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2=FULL/cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.773 -0.550 0.003
O2 2.055 -0.344 -0.365
O3 0.383 -1.567 0.547
C4 -0.084 0.675 -0.310
C5 -1.507 0.449 0.198
O6 -2.112 -0.677 -0.391
N7 0.451 1.919 0.229
H8 2.533 -1.155 -0.121
H9 -0.125 0.764 -1.410
H10 -1.480 0.385 1.304
H11 -2.103 1.333 -0.073
H12 -1.636 -1.435 -0.028
H13 1.366 2.110 -0.177
H14 0.588 1.826 1.236

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34971.21761.52712.49702.91502.50041.86452.12822.76533.43832.56612.73152.6836
O21.34972.26372.37003.69264.18112.83720.97132.65973.97744.49323.86332.55643.0703
O31.21762.26372.44482.78532.81023.50122.28893.08572.80253.86922.10273.87453.4685
C41.52712.37002.44481.52772.43921.45773.19791.10422.15442.13692.63392.04442.0411
C52.49703.69262.78531.52771.40792.44834.35782.14311.10901.09951.90183.33932.7132
O62.91504.18112.81022.43921.40793.70084.67732.65822.09802.03490.96604.46254.0255
N72.50042.83723.50121.45772.44833.70083.72862.08572.69102.63763.95821.01881.0203
H81.86450.97132.28893.19794.35784.67733.72863.52194.52835.26084.17863.46723.8089
H92.12822.65973.08571.10422.14312.65822.08573.52193.05752.45423.00462.35682.9384
H102.76533.97742.80252.15441.10902.09802.69104.52833.05751.78412.26043.64312.5220
H113.43834.49323.86922.13691.09952.03492.63765.26082.45421.78412.80693.55643.0325
H122.56613.86332.10272.63391.90180.96603.95824.17863.00462.26042.80694.64724.1442
H132.73152.55643.87452.04443.33934.46251.01883.46722.35683.64313.55644.64721.6372
H142.68363.07033.46852.04112.71324.02551.02033.80892.93842.52203.03254.14421.6372

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 105.736 C1 C4 C5 109.650
C1 C4 N7 113.782 C1 C4 H9 106.855
O2 C1 O3 123.624 O2 C1 C4 110.787
O3 C1 C4 125.552 C4 C5 O6 112.321
C4 C5 H10 108.546 C4 C5 H11 107.742
C4 N7 H13 110.023 C4 N7 H14 109.652
C5 C4 N7 110.169 C5 C4 H9 107.954
C5 O6 H12 104.947 O6 C5 H10 112.395
O6 C5 H11 107.865 N7 C4 H9 108.212
H10 C5 H11 107.772 H13 N7 H14 106.810
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability