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All results from a given calculation for C5H4N4 (purine)

using model chemistry: SVWN/3-21G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at SVWN/3-21G*
 hartrees
Energy at 0K-407.422059
Energy at 298.15K-407.429990
HF Energy-407.422059
Nuclear repulsion energy410.652744
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at SVWN/3-21G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3501 3501 94.27      
2 A' 3209 3209 0.19      
3 A' 3139 3139 11.18      
4 A' 3115 3115 7.68      
5 A' 1612 1612 49.03      
6 A' 1558 1558 31.13      
7 A' 1443 1443 35.98      
8 A' 1427 1427 6.05      
9 A' 1397 1397 16.21      
10 A' 1357 1357 7.34      
11 A' 1337 1337 53.04      
12 A' 1286 1286 37.88      
13 A' 1268 1268 6.69      
14 A' 1241 1241 60.63      
15 A' 1173 1173 6.40      
16 A' 1110 1110 5.17      
17 A' 1060 1060 14.86      
18 A' 929 929 1.94      
19 A' 883 883 9.65      
20 A' 790 790 11.30      
21 A' 661 661 0.75      
22 A' 564 564 4.38      
23 A' 435 435 14.85      
24 A" 999 999 3.72      
25 A" 953 953 12.43      
26 A" 884 884 7.08      
27 A" 858 858 24.36      
28 A" 682 682 150.59      
29 A" 669 669 1.34      
30 A" 629 629 22.11      
31 A" 436 436 1.72      
32 A" 251 251 0.63      
33 A" 239 239 6.55      

Unscaled Zero Point Vibrational Energy (zpe) 20546.2 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 20546.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at SVWN/3-21G*
ABC
0.13725 0.05796 0.04075

See section I.F.4 to change rotational constant units
Geometric Data calculated at SVWN/3-21G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.818 -1.265 0.000
C2 -2.126 0.059 0.000
N3 -1.278 1.091 0.000
C4 0.000 0.705 0.000
C5 0.456 -0.631 0.000
C6 -0.532 -1.613 0.000
N7 1.842 -0.686 0.000
C8 2.198 0.586 0.000
N9 1.127 1.478 0.000
H10 -3.191 0.298 0.000
H11 -0.284 -2.679 0.000
H12 3.229 0.926 0.000
H13 1.156 2.499 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35932.41662.68092.36081.33303.70614.42194.02472.08032.08645.50234.7971
C21.35931.33562.22222.67292.31084.03804.35593.54921.09153.29995.42504.0898
N32.41661.33561.33472.44352.80503.59063.51202.43582.07113.89804.50992.8120
C42.68092.22221.33471.41212.37872.30872.20101.36663.21713.39563.23662.1339
C52.36082.67292.44351.41211.39271.38752.12502.21363.76382.17683.18053.2075
C61.33302.31082.80502.37871.39272.54863.50513.50833.27521.09374.53784.4450
N73.70614.03803.59062.30871.38752.54861.32082.27955.12902.91382.12663.2580
C84.42194.35593.51202.20102.12503.50511.32081.39385.39674.10061.08602.1780
N94.02473.54922.43581.36662.21363.50832.27951.39384.47664.38962.17341.0210
H102.08031.09152.07113.21713.76383.27525.12905.39674.47664.16096.45104.8728
H112.08643.29993.89803.39562.17681.09372.91384.10064.38964.16095.03325.3738
H125.50235.42504.50993.23663.18054.53782.12661.08602.17346.45105.03322.6020
H134.79714.08982.81202.13393.20754.44503.25802.17801.02104.87285.37382.6020

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.468 N1 C2 H10 115.738
N1 C6 C5 120.008 N1 C6 H11 118.252
C2 N1 C6 118.249 C2 N3 C4 112.654
N3 C2 H10 116.794 N3 C4 C5 125.621
N3 C4 N9 128.771 C4 C5 C6 116.001
C4 C5 N7 111.103 C4 N9 C8 105.753
C4 N9 H13 126.088 C5 C4 N9 105.609
C5 C6 H11 121.740 C5 N7 C8 103.341
C6 C5 N7 132.896 N7 C8 N9 114.195
N7 C8 H12 123.858 C8 N9 H13 128.159
N9 C8 H12 121.947
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at SVWN/3-21G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.458      
2 C 0.108      
3 N -0.500      
4 C 0.558      
5 C 0.126      
6 C 0.048      
7 N -0.496      
8 C 0.219      
9 N -0.717      
10 H 0.248      
11 H 0.249      
12 H 0.259      
13 H 0.356      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.171 3.201 0.000 3.868
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.746 6.236 0.000
y 6.236 -46.534 0.000
z 0.000 0.000 -52.283
Traceless
 xyz
x -0.337 6.236 0.000
y 6.236 4.480 0.000
z 0.000 0.000 -4.143
Polar
3z2-r2-8.285
x2-y2-3.211
xy6.236
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.201 1.394 0.000
y 1.394 10.629 0.000
z 0.000 0.000 3.229


<r2> (average value of r2) Å2
<r2> 255.890
(<r2>)1/2 15.997