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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B1B95/3-21G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B1B95/3-21G*
 hartrees
Energy at 0K-409.489765
Energy at 298.15K-409.497864
HF Energy-409.489765
Nuclear repulsion energy410.999618
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B1B95/3-21G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3640 3476 109.54      
2 A' 3319 3169 0.20      
3 A' 3258 3111 14.59      
4 A' 3237 3091 8.87      
5 A' 1639 1565 57.59      
6 A' 1591 1519 39.22      
7 A' 1489 1422 36.41      
8 A' 1471 1405 3.55      
9 A' 1433 1369 17.85      
10 A' 1403 1339 18.92      
11 A' 1371 1310 38.82      
12 A' 1303 1244 50.64      
13 A' 1289 1231 25.84      
14 A' 1239 1183 45.22      
15 A' 1195 1141 7.15      
16 A' 1122 1072 5.12      
17 A' 1085 1036 17.41      
18 A' 949 907 0.62      
19 A' 902 861 11.84      
20 A' 801 765 12.03      
21 A' 671 641 0.62      
22 A' 575 549 3.83      
23 A' 443 423 14.63      
24 A" 1047 1000 2.61      
25 A" 993 948 14.30      
26 A" 928 886 0.03      
27 A" 896 856 32.59      
28 A" 699 668 165.46      
29 A" 683 652 0.67      
30 A" 643 614 24.80      
31 A" 460 439 2.37      
32 A" 267 255 1.31      
33 A" 249 238 5.67      

Unscaled Zero Point Vibrational Energy (zpe) 21144.8 cm-1
Scaled (by 0.9549) Zero Point Vibrational Energy (zpe) 20191.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B1B95/3-21G*
ABC
0.13776 0.05792 0.04077

See section I.F.4 to change rotational constant units
Geometric Data calculated at B1B95/3-21G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.818 -1.264 0.000
C2 -2.127 0.060 0.000
N3 -1.280 1.090 0.000
C4 0.000 0.703 0.000
C5 0.454 -0.628 0.000
C6 -0.532 -1.610 0.000
N7 1.845 -0.685 0.000
C8 2.199 0.583 0.000
N9 1.128 1.475 0.000
H10 -3.178 0.296 0.000
H11 -0.290 -2.662 0.000
H12 3.217 0.919 0.000
H13 1.159 2.484 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35972.41492.67872.36011.33143.70924.42164.02312.06942.07135.48884.7866
C21.35971.33332.22172.67102.30864.04124.35703.54901.07743.28385.41274.0827
N32.41491.33331.33702.44072.80113.59393.51532.43852.05763.88014.50032.8088
C42.67872.22171.33701.40592.37302.30892.20211.36713.20393.37713.22472.1248
C52.36012.67102.44071.40591.39211.39222.12352.20813.74782.16593.16683.1903
C61.33142.30862.80112.37301.39212.55133.50263.50333.26031.07984.52314.4292
N73.70924.04123.59392.30891.39222.55131.31642.27615.11812.90962.11113.2424
C84.42164.35703.51532.20212.12353.50261.31641.39365.38454.08921.07272.1667
N94.02313.54902.43851.36712.20813.50332.27611.39364.46474.37312.16191.0092
H102.06941.07742.05763.20393.74783.26035.11815.38454.46474.13406.42574.8575
H112.07133.28383.88013.37712.16591.07982.90964.08924.37314.13405.01255.3457
H125.48885.41274.50033.22473.16684.52312.11111.07272.16196.42575.01252.5856
H134.78664.08272.80882.12483.19034.42923.24242.16671.00924.85755.34572.5856

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.460 N1 C2 H10 115.742
N1 C6 C5 120.102 N1 C6 H11 118.035
C2 N1 C6 118.143 C2 N3 C4 112.607
N3 C2 H10 116.798 N3 C4 C5 125.680
N3 C4 N9 128.777 C4 C5 C6 116.009
C4 C5 N7 111.211 C4 N9 C8 105.807
C4 N9 H13 126.138 C5 C4 N9 105.544
C5 C6 H11 121.863 C5 N7 C8 103.219
C6 C5 N7 132.780 N7 C8 N9 114.219
N7 C8 H12 123.855 C8 N9 H13 128.055
N9 C8 H12 121.925
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B1B95/3-21G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.536      
2 C 0.184      
3 N -0.582      
4 C 0.645      
5 C 0.107      
6 C 0.106      
7 N -0.554      
8 C 0.286      
9 N -0.799      
10 H 0.255      
11 H 0.260      
12 H 0.265      
13 H 0.363      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.126 3.094 0.000 3.754
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.673 6.263 0.000
y 6.263 -46.898 0.000
z 0.000 0.000 -52.342
Traceless
 xyz
x -0.053 6.263 0.000
y 6.263 4.110 0.000
z 0.000 0.000 -4.057
Polar
3z2-r2-8.113
x2-y2-2.775
xy6.263
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.677 1.348 0.000
y 1.348 10.391 0.000
z 0.000 0.000 3.168


<r2> (average value of r2) Å2
<r2> 255.717
(<r2>)1/2 15.991