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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/cc-pVTZ
 hartrees
Energy at 0K-398.712622
Energy at 298.15K-398.722623
HF Energy-398.712622
Nuclear repulsion energy327.284789
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3800 3652 67.27      
2 A 3784 3637 90.25      
3 A 3620 3480 6.04      
4 A 3531 3394 1.95      
5 A 3118 2997 18.74      
6 A 3054 2935 14.04      
7 A 2990 2873 50.53      
8 A 1819 1748 272.20      
9 A 1661 1596 33.65      
10 A 1498 1440 4.14      
11 A 1437 1381 36.65      
12 A 1401 1346 23.12      
13 A 1393 1339 58.16      
14 A 1380 1326 6.14      
15 A 1321 1270 8.88      
16 A 1245 1197 13.34      
17 A 1200 1153 11.92      
18 A 1176 1130 200.55      
19 A 1145 1101 28.16      
20 A 1117 1074 116.10      
21 A 1035 995 33.21      
22 A 1001 962 1.43      
23 A 871 837 155.94      
24 A 822 790 40.72      
25 A 751 722 23.27      
26 A 631 606 89.30      
27 A 585 562 9.79      
28 A 551 530 184.15      
29 A 518 498 10.37      
30 A 446 428 8.19      
31 A 298 287 4.86      
32 A 288 277 8.30      
33 A 254 244 27.78      
34 A 212 204 6.53      
35 A 156 150 3.69      
36 A 29 28 1.02      

Unscaled Zero Point Vibrational Energy (zpe) 25069.2 cm-1
Scaled (by 0.9611) Zero Point Vibrational Energy (zpe) 24094.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/cc-pVTZ
ABC
0.11982 0.07918 0.05213

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/cc-pVTZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.782 -0.532 0.009
O2 2.051 -0.338 -0.375
O3 0.417 -1.538 0.563
C4 -0.093 0.671 -0.308
C5 -1.511 0.427 0.188
O6 -2.095 -0.709 -0.389
N7 0.416 1.921 0.228
H8 2.548 -1.130 -0.137
H9 -0.128 0.754 -1.398
H10 -1.498 0.366 1.284
H11 -2.114 1.292 -0.089
H12 -1.625 -1.470 -0.038
H13 1.314 2.151 -0.172
H14 0.531 1.865 1.231

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.33961.20461.52172.49262.90982.48981.86942.11262.76283.42412.58422.74162.7022
O21.33962.23362.37043.68654.16222.85250.96482.64313.98044.48123.86142.60343.1211
O31.20462.23362.42872.77852.81143.47452.27933.06502.79473.85192.13033.86673.4691
C41.52172.37042.42871.52212.43261.45153.20101.09402.14552.12512.64672.04672.0448
C52.49263.68652.77851.52211.40112.43854.35942.12981.09821.08971.91363.32942.7061
O62.90984.16222.81142.43261.40113.68744.66832.65042.07592.02280.96064.45494.0172
N72.48982.85253.47451.45152.43853.68743.73932.07422.68312.62593.96641.00971.0114
H81.86940.96482.27933.20104.35944.66833.73933.50684.54145.25314.18813.50523.8609
H92.11262.64313.06501.09402.12982.65042.07423.50683.03722.43863.00602.35332.9295
H102.76283.98042.79472.14551.09822.07592.68314.54143.03721.76732.26533.63562.5231
H113.42414.48123.85192.12511.08972.02282.62595.25312.43861.76732.80483.53503.0104
H122.58423.86142.13032.64671.91360.96063.96644.18813.00602.26532.80484.66584.1684
H132.74162.60343.86672.04673.32944.45491.00973.50522.35333.63563.53504.66581.6321
H142.70223.12113.46912.04482.70614.01721.01143.86092.92952.52313.01044.16841.6321

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.309 C1 C4 C5 109.954
C1 C4 N7 113.717 C1 C4 H9 106.590
O2 C1 O3 122.696 O2 C1 C4 111.723
O3 C1 C4 125.561 C4 C5 O6 112.576
C4 C5 H10 108.853 C4 C5 H11 107.763
C4 N7 H13 111.248 C4 N7 H14 110.986
C5 C4 N7 110.155 C5 C4 H9 107.874
C5 O6 H12 106.749 O6 C5 H10 111.748
O6 C5 H11 107.956 N7 C4 H9 108.320
H10 C5 H11 107.752 H13 N7 H14 107.710
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.285      
2 O -0.249      
3 O -0.327      
4 C -0.051      
5 C 0.027      
6 O -0.350      
7 N -0.308      
8 H 0.218      
9 H 0.118      
10 H 0.052      
11 H 0.102      
12 H 0.214      
13 H 0.141      
14 H 0.128      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.139 0.584 0.579 3.245
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.091 -2.115 -1.177
y -2.115 -43.807 1.717
z -1.177 1.717 -40.191
Traceless
 xyz
x 0.908 -2.115 -1.177
y -2.115 -3.167 1.717
z -1.177 1.717 2.258
Polar
3z2-r24.517
x2-y22.717
xy-2.115
xz-1.177
yz1.717


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.707 0.056 -0.209
y 0.056 8.468 -0.142
z -0.209 -0.142 6.543


<r2> (average value of r2) Å2
<r2> 213.649
(<r2>)1/2 14.617