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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: PBEPBE/6-31+G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at PBEPBE/6-31+G**
 hartrees
Energy at 0K-595.492520
Energy at 298.15K-595.505148
Nuclear repulsion energy285.157718
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/6-31+G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3053 3018 35.59      
2 A' 2991 2957 39.13      
3 A' 2972 2938 45.24      
4 A' 2968 2934 37.89      
5 A' 2961 2927 17.12      
6 A' 2946 2913 9.90      
7 A' 2630 2600 15.65      
8 A' 1465 1448 9.79      
9 A' 1456 1440 0.73      
10 A' 1445 1428 1.81      
11 A' 1443 1426 1.06      
12 A' 1437 1421 0.51      
13 A' 1372 1356 4.68      
14 A' 1355 1340 0.01      
15 A' 1328 1313 12.02      
16 A' 1264 1250 11.69      
17 A' 1205 1191 17.94      
18 A' 1107 1094 3.87      
19 A' 1054 1042 0.27      
20 A' 1042 1030 1.70      
21 A' 1008 997 0.47      
22 A' 888 878 0.78      
23 A' 838 829 1.55      
24 A' 721 713 3.84      
25 A' 427 422 1.59      
26 A' 339 335 0.34      
27 A' 241 238 1.29      
28 A' 114 113 1.20      
29 A" 3049 3015 31.37      
30 A" 3046 3011 41.72      
31 A" 3014 2980 35.51      
32 A" 3000 2966 6.16      
33 A" 2978 2944 1.68      
34 A" 1458 1441 9.93      
35 A" 1290 1275 0.19      
36 A" 1289 1274 0.95      
37 A" 1244 1230 0.30      
38 A" 1180 1167 0.32      
39 A" 1049 1037 2.66      
40 A" 938 927 0.07      
41 A" 821 811 1.99      
42 A" 743 735 0.20      
43 A" 719 711 4.43      
44 A" 248 245 0.00      
45 A" 159 158 9.05      
46 A" 143 142 6.45      
47 A" 95 94 4.13      
48 A" 66 65 2.45      

Unscaled Zero Point Vibrational Energy (zpe) 34297.6 cm-1
Scaled (by 0.9886) Zero Point Vibrational Energy (zpe) 33906.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/6-31+G**
ABC
0.47159 0.02631 0.02552

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/6-31+G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.424 1.691 0.000
H2 -3.675 1.161 0.000
C3 -1.507 0.086 0.000
H4 -1.791 -0.493 0.895
H5 -1.791 -0.493 -0.895
C6 0.000 0.357 0.000
H7 0.262 0.965 -0.887
H8 0.262 0.965 0.887
C9 0.829 -0.936 0.000
H10 0.561 -1.546 0.885
H11 0.561 -1.546 -0.885
C12 2.345 -0.687 0.000
H13 2.613 -0.077 0.884
H14 2.613 -0.077 -0.884
C15 3.170 -1.980 0.000
H16 2.949 -2.595 0.890
H17 2.949 -2.595 -0.890
H18 4.252 -1.770 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.35791.84942.44412.44412.76722.92072.92074.18244.49224.49225.32995.41115.41116.69186.93096.93097.5207
H21.35792.41972.66192.66193.76164.04014.04014.96875.10465.10466.29746.46876.46877.53137.66657.66658.4517
C31.84942.41971.10301.10301.53162.16582.16582.55042.77942.77943.92934.21674.21675.11325.27595.27596.0512
H42.44412.66191.10301.79052.17553.08492.51832.80462.57743.13274.23674.42334.76775.25625.18535.48416.2416
H52.44412.66191.10301.79052.17552.51833.08492.80463.13272.57744.23674.76774.42335.25625.48415.18536.2416
C62.76723.76161.53162.17552.17551.10641.10641.53692.17312.17312.56742.79212.79213.93894.26684.26684.7549
H72.92074.04012.16583.08492.51831.10641.77302.17363.08812.52922.80293.12182.57124.23314.80124.46034.9184
H82.92074.04012.16582.51833.08491.10641.77302.17362.52923.08812.80292.57123.12184.23314.46034.80124.9184
C94.18244.96872.55042.80462.80461.53692.17362.17361.10801.10801.53632.16782.16782.56292.83472.83473.5231
H104.49225.10462.77942.57743.13272.17313.08812.52921.10801.77082.16912.52313.08172.78892.60793.15513.8025
H114.49225.10462.77943.13272.57742.17312.52923.08811.10801.77082.16913.08172.52312.78893.15512.60793.8025
C125.32996.29743.92934.23674.23672.56742.80292.80291.53632.16912.16911.10671.10671.53402.19022.19022.1931
H135.41116.46874.21674.42334.76772.79213.12182.57122.16782.52313.08171.10671.76792.17142.54023.09852.5173
H145.41116.46874.21674.76774.42332.79212.57123.12182.16783.08172.52311.10671.76792.17143.09852.54022.5173
C156.69187.53135.11325.25625.25623.93894.23314.23312.56292.78892.78891.53402.17142.17141.10411.10411.1028
H166.93097.66655.27595.18535.48414.26684.80124.46032.83472.60793.15512.19022.54023.09851.10411.78081.7811
H176.93097.66655.27595.48415.18534.26684.46034.80122.83473.15512.60792.19023.09852.54021.10411.78081.7811
H187.52078.45176.05126.24166.24164.75494.91844.91843.52313.80253.80252.19312.51732.51731.10281.78111.7811

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 109.128 S1 C3 H5 109.128
S1 C3 C6 109.503 H2 S1 C3 96.759
C3 C6 H7 109.310 C3 C6 H8 109.310
C3 C6 C9 112.434 H4 C3 H5 108.522
H4 C3 C6 110.266 H5 C3 C6 110.266
C6 C9 H10 109.429 C6 C9 H11 109.429
C6 C9 C12 113.319 H7 C6 H8 106.502
H7 C6 C9 109.554 H8 C6 C9 109.554
C9 C12 H13 109.128 C9 C12 H14 109.128
C9 C12 C15 113.176 H10 C9 H11 106.091
H10 C9 C12 109.159 H11 C9 C12 109.159
C12 C15 H16 111.198 C12 C15 H17 111.198
C12 C15 H18 111.513 H13 C12 H14 106.016
H13 C12 C15 109.570 H14 C12 C15 109.570
H16 C15 H17 107.490 H16 C15 H18 107.622
H17 C15 H18 107.622
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/6-31+G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.100      
2 H 0.075      
3 C -0.580      
4 H 0.203      
5 H 0.203      
6 C -0.173      
7 H 0.181      
8 H 0.181      
9 C -0.311      
10 H 0.164      
11 H 0.164      
12 C -0.133      
13 H 0.167      
14 H 0.167      
15 C -0.712      
16 H 0.169      
17 H 0.169      
18 H 0.169      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.352 -1.797 0.000 1.831
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -45.686 3.689 0.000
y 3.689 -52.970 0.000
z 0.000 0.000 -49.387
Traceless
 xyz
x 5.492 3.689 0.000
y 3.689 -5.434 0.000
z 0.000 0.000 -0.059
Polar
3z2-r2-0.117
x2-y27.284
xy3.689
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.393 -2.170 0.000
y -2.170 12.477 0.000
z 0.000 0.000 10.430


<r2> (average value of r2) Å2
<r2> 416.928
(<r2>)1/2 20.419