All results from a given calculation for HO2CCHNH2CH2OH (Serine)
using model chemistry: CCSD=FULL/aug-cc-pVDZ
19 10 17 12 22
States and conformations
State |
Conformation |
minimum conformation |
conformer description |
state description |
1 |
1 |
yes |
C1 |
1A |
Energy calculated at CCSD=FULL/aug-cc-pVDZ
| hartrees |
Energy at 0K | -398.049437 |
Energy at 298.15K | |
HF Energy | -396.790856 |
Nuclear repulsion energy | 324.255071 |
The energy at 298.15K was derived from the energy at 0K
and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at CCSD=FULL/aug-cc-pVDZ
Geometric Data calculated at CCSD=FULL/aug-cc-pVDZ
Point Group is C1
Cartesians (Å)
Atom |
x (Å) |
y (Å) |
z (Å) |
C1 |
0.800 |
-0.533 |
0.019 |
O2 |
2.073 |
-0.332 |
-0.394 |
O3 |
0.438 |
-1.547 |
0.582 |
C4 |
-0.094 |
0.670 |
-0.309 |
C5 |
-1.525 |
0.423 |
0.192 |
O6 |
-2.124 |
-0.716 |
-0.401 |
N7 |
0.408 |
1.935 |
0.233 |
H8 |
2.582 |
-1.123 |
-0.166 |
H9 |
-0.127 |
0.752 |
-1.409 |
H10 |
-1.516 |
0.354 |
1.298 |
H11 |
-2.131 |
1.297 |
-0.087 |
H12 |
-1.676 |
-1.494 |
-0.052 |
H13 |
1.311 |
2.178 |
-0.168 |
H14 |
0.525 |
1.882 |
1.244 |
Atom - Atom Distances (Å)
|
C1 |
O2 |
O3 |
C4 |
C5 |
O6 |
N7 |
H8 |
H9 |
H10 |
H11 |
H12 |
H13 |
H14 |
C1 | | 1.3526 | 1.2157 | 1.5344 | 2.5197 | 2.9600 | 2.5082 | 1.8859 | 2.1329 | 2.7906 | 3.4571 | 2.6569 | 2.7647 | 2.7216 |
O2 | 1.3526 | | 2.2585 | 2.3888 | 3.7221 | 4.2144 | 2.8816 | 0.9682 | 2.6539 | 4.0262 | 4.5186 | 3.9392 | 2.6325 | 3.1586 | O3 | 1.2157 | 2.2585 | | 2.4486 | 2.8088 | 2.8683 | 3.5002 | 2.3093 | 3.0942 | 2.8193 | 3.8914 | 2.2079 | 3.8990 | 3.4933 | C4 | 1.5344 | 2.3888 | 2.4486 | | 1.5357 | 2.4594 | 1.4653 | 3.2245 | 1.1037 | 2.1686 | 2.1425 | 2.6928 | 2.0660 | 2.0653 | C5 | 2.5197 | 3.7221 | 2.8088 | 1.5357 | | 1.4169 | 2.4543 | 4.4025 | 2.1511 | 1.1078 | 1.0999 | 1.9389 | 3.3541 | 2.7271 | O6 | 2.9600 | 4.2144 | 2.8683 | 2.4594 | 1.4169 | | 3.7203 | 4.7295 | 2.6758 | 2.0978 | 2.0373 | 0.9643 | 4.4974 | 4.0586 | N7 | 2.5082 | 2.8816 | 3.5002 | 1.4653 | 2.4543 | 3.7203 | | 3.7733 | 2.0938 | 2.7081 | 2.6372 | 4.0231 | 1.0173 | 1.0195 | H8 | 1.8859 | 0.9682 | 2.3093 | 3.2245 | 4.4025 | 4.7295 | 3.7733 | | 3.5212 | 4.5952 | 5.2985 | 4.2750 | 3.5373 | 3.9046 | H9 | 2.1329 | 2.6539 | 3.0942 | 1.1037 | 2.1511 | 2.6758 | 2.0938 | 3.5212 | | 3.0687 | 2.4622 | 3.0477 | 2.3752 | 2.9570 | H10 | 2.7906 | 4.0262 | 2.8193 | 2.1686 | 1.1078 | 2.0978 | 2.7081 | 4.5952 | 3.0687 | | 1.7847 | 2.2947 | 3.6694 | 2.5498 | H11 | 3.4571 | 4.5186 | 3.8914 | 2.1425 | 1.0999 | 2.0373 | 2.6372 | 5.2985 | 2.4622 | 1.7847 | | 2.8290 | 3.5535 | 3.0280 | H12 | 2.6569 | 3.9392 | 2.2079 | 2.6928 | 1.9389 | 0.9643 | 4.0231 | 4.2750 | 3.0477 | 2.2947 | 2.8290 | | 4.7349 | 4.2334 | H13 | 2.7647 | 2.6325 | 3.8990 | 2.0660 | 3.3541 | 4.4974 | 1.0173 | 3.5373 | 2.3752 | 3.6694 | 3.5535 | 4.7349 | | 1.6431 | H14 | 2.7216 | 3.1586 | 3.4933 | 2.0653 | 2.7271 | 4.0586 | 1.0195 | 3.9046 | 2.9570 | 2.5498 | 3.0280 | 4.2334 | 1.6431 | |
More geometry information
Calculated Bond Angles
atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
C1 |
O2 |
H8 |
107.545 |
|
C1 |
C4 |
C5 |
110.317 |
C1 |
C4 |
N7 |
113.449 |
|
C1 |
C4 |
H9 |
106.759 |
O2 |
C1 |
O3 |
123.039 |
|
O2 |
C1 |
C4 |
111.518 |
O3 |
C1 |
C4 |
125.442 |
|
C4 |
C5 |
O6 |
112.746 |
C4 |
C5 |
H10 |
109.167 |
|
C4 |
C5 |
H11 |
107.612 |
C4 |
N7 |
H13 |
111.369 |
|
C4 |
N7 |
H14 |
111.167 |
C5 |
C4 |
N7 |
109.713 |
|
C5 |
C4 |
H9 |
108.057 |
C5 |
O6 |
H12 |
107.499 |
|
O6 |
C5 |
H10 |
111.804 |
O6 |
C5 |
H11 |
107.424 |
|
N7 |
C4 |
H9 |
108.350 |
H10 |
C5 |
H11 |
107.874 |
|
H13 |
N7 |
H14 |
107.545 |
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability