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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: B3LYPultrafine/aug-cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at B3LYPultrafine/aug-cc-pVTZ
 hartrees
Energy at 0K-596.070197
Energy at 298.15K-596.082993
HF Energy-596.070197
Nuclear repulsion energy286.726784
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYPultrafine/aug-cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3084 2984 39.28      
2 A' 3049 2950 33.17      
3 A' 3020 2922 45.97      
4 A' 3016 2918 33.85      
5 A' 3007 2910 14.42      
6 A' 2996 2899 6.41      
7 A' 2672 2585 4.55      
8 A' 1515 1465 8.61      
9 A' 1504 1455 0.13      
10 A' 1493 1444 2.03      
11 A' 1488 1440 1.43      
12 A' 1486 1438 0.13      
13 A' 1415 1369 1.93      
14 A' 1398 1352 0.33      
15 A' 1375 1331 7.33      
16 A' 1313 1270 6.34      
17 A' 1249 1208 17.57      
18 A' 1136 1099 2.78      
19 A' 1061 1027 0.31      
20 A' 1054 1020 0.75      
21 A' 1019 986 0.18      
22 A' 905 875 0.47      
23 A' 859 831 0.70      
24 A' 727 703 4.79      
25 A' 437 423 1.22      
26 A' 345 334 0.23      
27 A' 245 237 0.98      
28 A' 114 110 0.93      
29 A" 3097 2997 20.62      
30 A" 3078 2978 59.25      
31 A" 3052 2953 32.81      
32 A" 3035 2936 4.75      
33 A" 3015 2917 0.83      
34 A" 1500 1451 6.97      
35 A" 1336 1292 0.46      
36 A" 1332 1289 0.25      
37 A" 1288 1246 0.12      
38 A" 1225 1185 0.20      
39 A" 1082 1047 1.61      
40 A" 966 935 0.08      
41 A" 844 817 1.34      
42 A" 761 737 0.08      
43 A" 734 710 3.93      
44 A" 242 234 0.02      
45 A" 181 175 10.56      
46 A" 138 134 1.23      
47 A" 99 96 2.23      
48 A" 61 59 1.57      

Unscaled Zero Point Vibrational Energy (zpe) 35023.6 cm-1
Scaled (by 0.9675) Zero Point Vibrational Energy (zpe) 33885.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYPultrafine/aug-cc-pVTZ
ABC
0.47941 0.02652 0.02572

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYPultrafine/aug-cc-pVTZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.428 1.666 0.000
H2 -3.667 1.142 0.000
C3 -1.501 0.078 0.000
H4 -1.778 -0.494 0.884
H5 -1.778 -0.494 -0.884
C6 0.000 0.358 0.000
H7 0.255 0.959 -0.876
H8 0.255 0.959 0.876
C9 0.833 -0.927 0.000
H10 0.571 -1.529 0.876
H11 0.571 -1.529 -0.876
C12 2.341 -0.669 0.000
H13 2.602 -0.067 0.874
H14 2.602 -0.067 -0.874
C15 3.171 -1.953 0.000
H16 2.956 -2.561 0.881
H17 2.956 -2.561 -0.881
H18 4.240 -1.736 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.34511.83852.42272.42272.75752.90952.90954.16564.46824.46825.30985.39145.39146.66656.90096.90097.4851
H21.34512.41282.65032.65033.74934.02254.02254.95195.08475.08476.27456.44386.44387.50517.63797.63798.4135
C31.83852.41281.08911.08911.52672.15122.15122.54062.76432.76433.91384.19764.19765.09405.25365.25366.0201
H42.42272.65031.08911.76842.16093.05702.49912.79002.56673.11214.21654.40104.73935.23455.16515.45846.2075
H52.42272.65031.08911.76842.16092.49913.05702.79003.11212.56674.21654.73934.40105.23455.45845.16516.2075
C62.75753.74931.52672.16092.16091.09291.09291.53142.15742.15742.55652.77792.77793.92394.24674.24674.7286
H72.90954.02252.15123.05702.49911.09291.75302.15873.05962.50822.78773.10292.56164.21354.77234.43694.8897
H82.90954.02252.15122.49913.05701.09291.75302.15872.50823.05962.78772.56163.10294.21354.43694.77234.8897
C94.16564.95192.54062.79002.79001.53142.15872.15871.09431.09431.53042.15322.15322.55352.82022.82023.5017
H104.46825.08472.76432.56673.11212.15743.05962.50821.09431.75142.15402.50283.05402.77592.59843.13653.7773
H114.46825.08472.76433.11212.56672.15742.50823.05961.09431.75142.15403.05402.50282.77593.13652.59843.7773
C125.30986.27453.91384.21654.21652.55652.78772.78771.53042.15402.15401.09341.09341.52912.17582.17582.1778
H135.39146.44384.19764.40104.73932.77793.10292.56162.15322.50283.05401.09341.74902.15592.51933.07062.4965
H145.39146.44384.19764.73934.40102.77792.56163.10292.15323.05402.50281.09341.74902.15593.07062.51932.4965
C156.66657.50515.09405.23455.23453.92394.21354.21352.55352.77592.77591.52912.15592.15591.09171.09171.0907
H166.90097.63795.25365.16515.45844.24674.77234.43692.82022.59843.13652.17582.51933.07061.09171.76201.7622
H176.90097.63795.25365.45845.16514.24674.43694.77232.82023.13652.59842.17583.07062.51931.09171.76201.7622
H187.48518.41356.02016.20756.20754.72864.88974.88973.50173.77733.77732.17782.49652.49651.09071.76221.7622

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 108.992 S1 C3 H5 108.992
S1 C3 C6 109.704 H2 S1 C3 97.344
C3 C6 H7 109.287 C3 C6 H8 109.287
C3 C6 C9 112.357 H4 C3 H5 108.558
H4 C3 C6 110.281 H5 C3 C6 110.281
C6 C9 H10 109.369 C6 C9 H11 109.369
C6 C9 C12 113.228 H7 C6 H8 106.639
H7 C6 C9 109.553 H8 C6 C9 109.553
C9 C12 H13 109.161 C9 C12 H14 109.161
C9 C12 C15 113.148 H10 C9 H11 106.297
H10 C9 C12 109.171 H11 C9 C12 109.171
C12 C15 H16 111.142 C12 C15 H17 111.142
C12 C15 H18 111.363 H13 C12 H14 106.216
H13 C12 C15 109.459 H14 C12 C15 109.459
H16 C15 H17 107.617 H16 C15 H18 107.699
H17 C15 H18 107.699
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYPultrafine/aug-cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.268      
2 H 0.008      
3 C -0.390      
4 H 0.174      
5 H 0.174      
6 C -0.186      
7 H 0.189      
8 H 0.189      
9 C -0.043      
10 H 0.171      
11 H 0.171      
12 C -0.196      
13 H 0.140      
14 H 0.140      
15 C -0.800      
16 H 0.183      
17 H 0.183      
18 H 0.160      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.507 -1.649 0.000 1.725
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -46.633 3.692 0.000
y 3.692 -52.357 0.000
z 0.000 0.000 -49.007
Traceless
 xyz
x 4.049 3.692 0.000
y 3.692 -4.537 0.000
z 0.000 0.000 0.488
Polar
3z2-r20.976
x2-y25.724
xy3.692
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.281 -2.281 0.000
y -2.281 13.136 0.000
z 0.000 0.000 10.995


<r2> (average value of r2) Å2
<r2> 413.694
(<r2>)1/2 20.339