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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP3=FULL/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP3=FULL/6-31G*
 hartrees
Energy at 0K-397.843419
Energy at 298.15K-397.853605
HF Energy-396.712572
Nuclear repulsion energy326.016936
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP3=FULL/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3806 3571 57.54      
2 A 3764 3532 81.43      
3 A 3626 3402 3.75      
4 A 3532 3314 1.18      
5 A 3189 2992 18.49      
6 A 3122 2930 9.95      
7 A 3065 2876 43.50      
8 A 1903 1786 251.02      
9 A 1738 1630 40.37      
10 A 1570 1473 2.36      
11 A 1488 1397 41.82      
12 A 1464 1374 43.07      
13 A 1449 1359 43.98      
14 A 1427 1339 5.46      
15 A 1373 1288 9.83      
16 A 1288 1208 23.65      
17 A 1242 1165 79.31      
18 A 1221 1146 161.20      
19 A 1185 1112 16.18      
20 A 1143 1073 92.88      
21 A 1075 1009 44.02      
22 A 1034 970 2.10      
23 A 943 885 200.10      
24 A 844 791 18.92      
25 A 766 718 33.30      
26 A 650 610 115.33      
27 A 599 562 10.71      
28 A 561 527 242.47      
29 A 531 498 11.64      
30 A 455 427 6.87      
31 A 313 294 9.93      
32 A 303 284 23.55      
33 A 276 259 26.03      
34 A 228 214 2.13      
35 A 177 166 3.14      
36 A 38 36 1.02      

Unscaled Zero Point Vibrational Energy (zpe) 25693.9 cm-1
Scaled (by 0.9383) Zero Point Vibrational Energy (zpe) 24108.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP3=FULL/6-31G*
ABC
0.11950 0.07846 0.05171

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP3=FULL/6-31G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.775 -0.543 0.004
O2 2.055 -0.346 -0.361
O3 0.394 -1.558 0.545
C4 -0.088 0.673 -0.311
C5 -1.511 0.449 0.193
O6 -2.106 -0.691 -0.385
N7 0.444 1.919 0.226
H8 2.550 -1.150 -0.126
H9 -0.126 0.759 -1.404
H10 -1.498 0.394 1.293
H11 -2.106 1.319 -0.091
H12 -1.649 -1.459 -0.014
H13 1.349 2.130 -0.183
H14 0.571 1.849 1.232

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34601.21121.52402.49862.91082.49421.88012.11882.77553.43172.59152.74052.6965
O21.34602.24702.37383.69534.17562.84110.97272.65853.98854.49043.88362.58103.0917
O31.21122.24702.43732.78882.80453.49212.29403.07142.81923.86392.12013.87863.4801
C41.52402.37382.43731.52592.43641.45793.21171.09662.15372.13042.65932.05092.0497
C52.49863.69532.78881.52591.40962.44634.37532.13611.10091.09191.92453.33882.7159
O62.91084.17562.80452.43641.40963.69974.68532.65672.08812.03080.96844.46504.0292
N72.49422.84113.49211.45792.44633.69973.73872.08042.69012.63933.98181.01541.0170
H81.88010.97272.29403.21174.37534.68533.73873.52664.55835.27004.21143.49343.8408
H92.11882.65853.07141.09662.13612.65672.08043.52663.04722.44083.02842.35552.9369
H102.77553.98852.81922.15371.10092.08812.69014.55833.04721.77202.27263.64682.5306
H113.43174.49043.86392.13041.09192.03082.63935.27002.44081.77202.81673.55083.0337
H122.59153.88362.12012.65931.92450.96843.98184.21143.02842.27262.81674.68024.1750
H132.74052.58103.87862.05093.33884.46501.01543.49342.35553.64683.55084.68021.6393
H142.69653.09173.48012.04972.71594.02921.01703.84082.93692.53063.03374.17501.6393

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.265 C1 C4 C5 110.020
C1 C4 N7 113.516 C1 C4 H9 106.771
O2 C1 O3 122.882 O2 C1 C4 111.457
O3 C1 C4 125.637 C4 C5 O6 112.134
C4 C5 H10 109.074 C4 C5 H11 107.789
C4 N7 H13 110.767 C4 N7 H14 110.567
C5 C4 N7 110.123 C5 C4 H9 107.966
C5 O6 H12 106.577 O6 C5 H10 111.971
O6 C5 H11 107.869 N7 C4 H9 108.230
H10 C5 H11 107.820 H13 N7 H14 107.533
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability