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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/6-31G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/6-31G**
 hartrees
Energy at 0K-411.954165
Energy at 298.15K-411.962014
HF Energy-411.954165
Nuclear repulsion energy411.914635
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/6-31G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3666 3522 85.26      
2 A' 3254 3127 0.99      
3 A' 3191 3066 18.65      
4 A' 3180 3056 16.58      
5 A' 1661 1596 63.99      
6 A' 1622 1559 74.68      
7 A' 1534 1474 27.51      
8 A' 1492 1434 3.84      
9 A' 1436 1380 57.96      
10 A' 1423 1367 16.08      
11 A' 1372 1318 59.09      
12 A' 1322 1270 24.03      
13 A' 1303 1252 7.99      
14 A' 1285 1235 44.80      
15 A' 1209 1162 6.83      
16 A' 1136 1092 5.56      
17 A' 1083 1040 14.56      
18 A' 945 908 1.55      
19 A' 912 876 12.68      
20 A' 809 777 14.31      
21 A' 659 634 0.46      
22 A' 570 548 3.62      
23 A' 445 427 12.13      
24 A" 992 953 0.53      
25 A" 940 903 7.32      
26 A" 878 843 4.95      
27 A" 810 778 7.95      
28 A" 665 639 6.78      
29 A" 622 598 22.76      
30 A" 529 508 106.45      
31 A" 419 403 3.35      
32 A" 248 238 0.44      
33 A" 232 223 3.73      

Unscaled Zero Point Vibrational Energy (zpe) 20921.3 cm-1
Scaled (by 0.9608) Zero Point Vibrational Energy (zpe) 20101.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/6-31G**
ABC
0.13763 0.05838 0.04099

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/6-31G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.820 -1.256 0.000
C2 -2.106 0.068 0.000
N3 -1.272 1.103 0.000
C4 0.000 0.705 0.000
C5 0.453 -0.627 0.000
C6 -0.540 -1.610 0.000
N7 1.837 -0.692 0.000
C8 2.187 0.568 0.000
N9 1.131 1.469 0.000
H10 -3.164 0.308 0.000
H11 -0.312 -2.673 0.000
H12 3.214 0.901 0.000
H13 1.175 2.476 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35432.42122.67502.35791.32743.69974.40214.01642.06202.06875.47624.7854
C21.35431.32912.20062.65172.29514.01574.32223.52781.08443.27555.38504.0708
N32.42121.32911.33312.44272.80973.58993.50022.43152.05183.89554.49062.8069
C42.67502.20061.33311.40642.37712.30752.19101.36503.18883.39203.21972.1260
C52.35792.65172.44271.40641.39771.38562.10582.20243.73542.18443.15573.1860
C61.32742.29512.80972.37711.39772.54843.49033.50333.24971.08694.51684.4320
N73.69974.01573.58992.30751.38562.54841.30772.27275.09972.92282.10593.2365
C84.40214.32223.50022.19102.10583.49031.30771.38735.35704.09251.07972.1596
N94.01643.52782.43151.36502.20243.50332.27271.38734.44944.38582.15811.0087
H102.06201.08442.05183.18883.73543.24975.09975.35704.44944.12496.40524.8510
H112.06873.27553.89553.39202.18441.08692.92284.09254.38584.12495.02085.3597
H125.47625.38504.49063.21973.15574.51682.10591.07972.15816.40525.02082.5758
H134.78544.07082.80692.12603.18604.43203.23652.15961.00874.85105.35972.5758

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.912 N1 C2 H10 115.006
N1 C6 C5 119.808 N1 C6 H11 117.588
C2 N1 C6 117.698 C2 N3 C4 111.502
N3 C2 H10 116.082 N3 C4 C5 126.142
N3 C4 N9 128.615 C4 C5 C6 115.937
C4 C5 N7 111.477 C4 N9 C8 105.508
C4 N9 H13 126.521 C5 C4 N9 105.243
C5 C6 H11 122.604 C5 N7 C8 102.823
C6 C5 N7 132.586 N7 C8 N9 114.950
N7 C8 H12 123.505 C8 N9 H13 127.971
N9 C8 H12 121.545
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/6-31G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.429      
2 C 0.223      
3 N -0.482      
4 C 0.510      
5 C 0.211      
6 C 0.100      
7 N -0.497      
8 C 0.288      
9 N -0.569      
10 H 0.112      
11 H 0.121      
12 H 0.131      
13 H 0.279      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.196 2.945 0.000 3.673
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.972 6.082 0.000
y 6.082 -46.774 0.000
z 0.000 0.000 -51.043
Traceless
 xyz
x -1.063 6.082 0.000
y 6.082 3.734 0.000
z 0.000 0.000 -2.671
Polar
3z2-r2-5.341
x2-y2-3.198
xy6.082
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.772 1.374 0.000
y 1.374 11.440 0.000
z 0.000 0.000 4.222


<r2> (average value of r2) Å2
<r2> 254.358
(<r2>)1/2 15.949