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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/cc-pVTZ
 hartrees
Energy at 0K-412.089011
Energy at 298.15K-412.096918
HF Energy-412.089011
Nuclear repulsion energy413.397013
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3647 3525 83.93      
2 A' 3232 3124 0.49      
3 A' 3172 3067 14.30      
4 A' 3159 3054 14.70      
5 A' 1645 1590 65.38      
6 A' 1611 1557 77.01      
7 A' 1519 1468 24.51      
8 A' 1483 1434 2.50      
9 A' 1426 1379 48.52      
10 A' 1413 1365 25.93      
11 A' 1364 1318 50.36      
12 A' 1312 1268 34.12      
13 A' 1288 1245 0.11      
14 A' 1269 1227 49.43      
15 A' 1205 1165 6.76      
16 A' 1132 1094 6.44      
17 A' 1076 1040 16.95      
18 A' 947 915 1.45      
19 A' 911 881 12.81      
20 A' 807 780 14.07      
21 A' 661 639 0.44      
22 A' 570 551 3.41      
23 A' 446 431 11.90      
24 A" 1003 969 0.37      
25 A" 951 919 9.38      
26 A" 888 858 5.63      
27 A" 824 796 10.13      
28 A" 668 646 8.25      
29 A" 626 605 19.32      
30 A" 530 513 87.32      
31 A" 422 408 4.09      
32 A" 248 239 0.89      
33 A" 232 224 4.31      

Unscaled Zero Point Vibrational Energy (zpe) 20842.5 cm-1
Scaled (by 0.9666) Zero Point Vibrational Energy (zpe) 20146.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/cc-pVTZ
ABC
0.13888 0.05872 0.04127

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/cc-pVTZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.812 -1.253 0.000
C2 -2.102 0.066 0.000
N3 -1.270 1.096 0.000
C4 0.000 0.701 0.000
C5 0.449 -0.625 0.000
C6 -0.538 -1.606 0.000
N7 1.830 -0.686 0.000
C8 2.183 0.569 0.000
N9 1.128 1.465 0.000
H10 -3.157 0.304 0.000
H11 -0.311 -2.665 0.000
H12 3.208 0.900 0.000
H13 1.172 2.469 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35032.41032.66532.34711.32243.68684.39144.00422.05692.06135.46214.7705
C21.35031.32422.19632.64322.28964.00414.31493.52061.08073.26625.37504.0615
N32.41031.32421.32942.43162.79883.57553.49262.42642.04613.88084.48142.8015
C42.66532.19631.32941.39992.36922.29672.18711.36233.18143.38073.21362.1207
C52.34712.64322.43161.39991.39191.38282.10532.19693.72322.17733.15183.1766
C61.32242.28962.79882.36921.39192.54103.48373.49363.24121.08314.50654.4189
N73.68684.00413.57552.29671.38282.54101.30362.26215.08432.91592.10023.2223
C84.39144.31493.49262.18712.10533.48371.30361.38345.34624.08411.07652.1516
N94.00423.52062.42641.36232.19693.49362.26211.38344.43934.37322.15431.0050
H102.05691.08072.04613.18143.72323.24125.08435.34624.43934.11276.39184.8397
H112.06133.26623.88083.38072.17731.08312.91594.08414.37324.11275.00875.3435
H125.46215.37504.48143.21363.15184.50652.10021.07652.15436.39185.00872.5695
H134.77054.06152.80152.12073.17664.41893.22232.15161.00504.83975.34352.5695

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.633 N1 C2 H10 115.137
N1 C6 C5 119.681 N1 C6 H11 117.595
C2 N1 C6 117.885 C2 N3 C4 111.721
N3 C2 H10 116.230 N3 C4 C5 125.954
N3 C4 N9 128.683 C4 C5 C6 116.126
C4 C5 N7 111.245 C4 N9 C8 105.599
C4 N9 H13 126.570 C5 C4 N9 105.363
C5 C6 H11 122.724 C5 N7 C8 103.157
C6 C5 N7 132.629 N7 C8 N9 114.637
N7 C8 H12 123.588 C8 N9 H13 127.831
N9 C8 H12 121.775
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.183      
2 C 0.036      
3 N -0.189      
4 C 0.105      
5 C 0.034      
6 C -0.091      
7 N -0.201      
8 C 0.023      
9 N -0.076      
10 H 0.116      
11 H 0.131      
12 H 0.134      
13 H 0.161      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.195 2.925 0.000 3.657
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.658 6.143 0.000
y 6.143 -47.611 0.000
z 0.000 0.000 -51.773
Traceless
 xyz
x -0.966 6.143 0.000
y 6.143 3.605 0.000
z 0.000 0.000 -2.639
Polar
3z2-r2-5.277
x2-y2-3.048
xy6.143
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.863 1.421 0.000
y 1.421 12.407 0.000
z 0.000 0.000 5.955


<r2> (average value of r2) Å2
<r2> 253.324
(<r2>)1/2 15.916