CCCBDB calculation results Page

Home
- All data for one species
- Geometry
  - Experimental
  - Calculated
  - Comparisons
  - Bad Calculations
    - Bad moment of inertia
  - Tutorials and Explanations
    - Angle formulas
- Vibrations
  - Experimental
    - Vibrational frequencies
  - Calculated
    - Frequencies
  - Scale factors
- Reactions
- Entropies
- Ions
  - List Ions
  - Energy
    - Calculated Ionization Energy
    - Compare Ionzation energy
  - Electron Affinity
    - Calculated Electron affinity
    - Compare Electron affinity
  - Proton Affinity
    - Calculated Proton affinity
    - Compare Proton affinity
  - Ionization changes point group
Experimental
Calculated
- Energy
  - Optimized
  - Reaction
    - Reaction Energy 0K
    - Reaction Energy 298K
  - Internal Rotation
  - Orbital
  - Nuclear repulsion energy
  - Correlation
    - Full vs Frozen core energies
    - Partial correlation energies
  - Ion
  - Excited State
  - Basis Set Extrapolation
    - BSE energy
    - BSE Bond lengths
- Geometry
  - Calculated geometry
    - AIM bond orders
    - One type of bond
  - Rotation
  - Point group
  - State symmetry
  - <r2>
    - Sorted by r2
  - Z-matrix
  - Bad Calculations
- Vibrations
  - Frequencies
    - Animated vibrations
    - Anharmonic
  - Zero point energy (ZPE)
  - Scale Factors
  - Bad Calculations
- Electrostatics
  - Charges
  - Dipole
  - Quadrupole
  - Polarizability
  - Spin
    - Spin density
- Entropy and Heat Capacity
- Reaction
  - Reaction Energy 0K
  - Reaction Energy 298K
  - Isodesmic reactions
  - Transition State
- Lookup by property
  - By frequency
Comparisons
- Geometry
- Vibrations
- Energy
  - Reaction
  - Single point vs optimized
  - DFT grid size on energy
  - Semiempirical enthalpy
  - Internal rotation
  - Similar molecules
- Entropy
- Electrostatics
- Ion
Resources
- Info on Results
  - Calculations Done
  - Basis functions used
  - I/O files
- Glossary
- Conversion Forms
- Links
  - NIST Links
  - External links
- Thermochemistry
- Tutorials
  - Vibrations
    - Why scale vibrations
    - Zero-point energies
  - Entropy
    - Methyl rotor entropy
    - Entropy and conformations
  - Energy
  - Electrostatics
    - Dipole parts by point group
    - Quadrupoles
  - Geometry
    - Angle formulas
  - Cost
    - Cost Comparison
    - Timings Comparison
- Bad Calculations
  - Geometry
  - Vibrations
  - Low excited states
  - Oddities
    - NaCN Is not linear
FAQ Help
- Units
  - Choose Units
  - Explanations
- Credits
- Just show me
  - Show me a calculated geometry
- Summary
- Using
- List
  - Recent molecules
    - Choose a few
  - Molecules
  - Geometry
  - Vibrations
    - Big anharmonicity
  - Energy
    - Enthalpy at 0 Kelvin
  - Similar molecules
  - Ions, Dipoles, etc.
- Index of CCCBDB
- Feedback
  - Error form
  - Wants

	hartrees
Energy at 0K	-411.798462
Energy at 298.15K	-411.806411
HF Energy	-411.798462
Nuclear repulsion energy	408.906022

Mode Number	Symmetry	Frequency (cm^-1)	Scaled Frequency (cm^-1)	IR Intensities (km mol^-1)
1	A'	3683	3543	81.84
2	A'	3309	3183	0.34
3	A'	3255	3132	14.14
4	A'	3230	3107	10.18
5	A'	1642	1580	60.08
6	A'	1599	1538	45.39
7	A'	1499	1442	36.64
8	A'	1473	1417	3.75
9	A'	1432	1378	20.58
10	A'	1413	1359	22.70
11	A'	1364	1312	41.65
12	A'	1311	1262	43.80
13	A'	1287	1239	9.27
14	A'	1263	1215	59.24
15	A'	1198	1152	3.75
16	A'	1116	1073	6.02
17	A'	1090	1049	17.98
18	A'	951	915	0.47
19	A'	902	868	12.17
20	A'	800	770	11.65
21	A'	663	638	0.36
22	A'	571	549	3.23
23	A'	442	425	14.38
24	A"	994	956	0.89
25	A"	945	910	15.51
26	A"	886	853	2.88
27	A"	815	784	15.97
28	A"	666	641	8.42
29	A"	658	633	170.81
30	A"	626	602	13.79
31	A"	435	419	0.51
32	A"	256	246	2.23
33	A"	233	224	2.89

Atom	x (Å)	y (Å)
N1	-1.824	-1.274
C2	-2.138	0.056
N3	-1.289	1.094
C4	0.000	0.708
C5	0.456	-0.630
C6	-0.530	-1.625
N7	1.854	-0.682
C8	2.208	0.592
N9	1.133	1.485
H10	-3.193	0.288
H11	-0.292	-2.682
H12	3.230	0.929
H13	1.165	2.493

	N1	C2	N3	C4	C5	C6	N7	C8	N9	H10	H11	H12	H13
N1		1.3669	2.4282	2.6941	2.3696	1.3404	3.7250	4.4431	4.0447	2.0771	2.0802	5.5130	4.8086
C2	1.3669		1.3414	2.2355	2.6836	2.3260	4.0594	4.3791	3.5697	1.0799	3.3019	5.4383	4.1044
N3	2.4282	1.3414		1.3451	2.4529	2.8226	3.6094	3.5324	2.4529	2.0679	3.9049	4.5212	2.8239
C4	2.6941	2.2355	1.3451		1.4140	2.3926	2.3171	2.2110	1.3737	3.2205	3.4025	3.2371	2.1308
C5	2.3696	2.6836	2.4529	1.4140		1.4010	1.3983	2.1359	2.2210	3.7628	2.1838	3.1814	3.2021
C6	1.3404	2.3260	2.8226	2.3926	1.4010		2.5634	3.5231	3.5269	3.2784	1.0833	4.5450	4.4526
N7	3.7250	4.0594	3.6094	2.3171	1.3983	2.5634		1.3225	2.2841	5.1388	2.9329	2.1185	3.2486
C8	4.4431	4.3791	3.5324	2.2110	2.1359	3.5231	1.3225		1.3978	5.4094	4.1191	1.0757	2.1682
N9	4.0447	3.5697	2.4529	1.3737	2.2210	3.5269	2.2841	1.3978		4.4884	4.4039	2.1694	1.0078
H10	2.0771	1.0799	2.0679	3.2205	3.7628	3.2784	5.1388	5.4094	4.4884		4.1512	6.4544	4.8835
H11	2.0802	3.3019	3.9049	3.4025	2.1838	1.0833	2.9329	4.1191	4.4039	4.1512		5.0435	5.3754
H12	5.5130	5.4383	4.5212	3.2371	3.1814	4.5450	2.1185	1.0757	2.1694	6.4544	5.0435		2.5905
H13	4.8086	4.1044	2.8239	2.1308	3.2021	4.4526	3.2486	2.1682	1.0078	4.8835	5.3754	2.5905

atom1	atom2	atom3	angle	atom1	atom2	atom3	angle
N1	C2	N3	127.415	N1	C2	H10	115.688
N1	C6	C5	119.608	N1	C6	H11	117.854
C2	N1	C6	118.440	C2	N3	C4	112.636
N3	C2	H10	116.897	N3	C4	C5	125.486
N3	C4	N9	128.892	C4	C5	C6	116.414
C4	C5	N7	110.956	C4	N9	C8	105.831
C4	N9	H13	126.249	C5	C4	N9	105.622
C5	C6	H11	122.538	C5	N7	C8	103.414
C6	C5	N7	132.630	N7	C8	N9	114.177
N7	C8	H12	123.786	C8	N9	H13	127.920
N9	C8	H12	122.037

All results from a given calculation for C₅H₄N₄ (purine)

using model chemistry: B3LYP/6-31G

States and conformations

	Computational Chemistry Comparison and Benchmark DataBase Release 22 (May 2022) Standard Reference Database 101 National Institute of Standards and Technology
	Home All data for one species Geometry Experimental Experimental Geometries Same bond/angle many molecules Internal Coordinates by type Bond angles Calculated Calculated geometry Rotational constant Moments of inertia Products of moments of inertia BSE Bond lengths Show me a calculated geometry Comparisons Bonds, angles Rotational Constants Products of moments of inertia Point group Bad Calculations Bad moment of inertia Tutorials and Explanations Angle formulas Vibrations Experimental Vibrational frequencies Calculated Frequencies Scale factors Reactions Entropies Ions List Ions Energy Calculated Ionization Energy Compare Ionzation energy Electron Affinity Calculated Electron affinity Compare Electron affinity Proton Affinity Calculated Proton affinity Compare Proton affinity Ionization changes point group Experimental One molecule all properties One property a few molecules Enthalpy of formation Entropy Integrated Heat Capacity Heat Capacity Rotational Constants Vibrational Frequencies Dipole moment Ionization Energy Polarizability Quadrupole Point Groups Geometry Experimental Geometries Internal Coordinates by type Bond angles Rotational Constants Point Groups Diatomic bond lengths Vibrations Vibrational frequencies Diatomic Triatomics Energy Atomization Energy Internal Rotation Electrostatics Dipole Quadrupole Polarizability Reference Data Reference states Spin Splittings Molecules with good enthalpy Enthalpy at 0 Kelvin Calculated Energy Optimized Energy Energy 298K Minimum conformation Hydrogen bonds H bond with counterpoise Reaction Reaction Energy 0K Reaction Energy 298K Internal Rotation Barriers to internal rotation Rotational barrier and dipole Rotational Barrier 2 molecules Orbital HOMO LUMO gap HOMO Orbital Energies Nuclear repulsion energy Correlation Full vs Frozen core energies Partial correlation energies Ion Calculated Ionization Energy Vertical ionization Energy Calculated Electron affinity Calculated Proton affinity Atom charge differences Excited State Singlet triplet gap Electronic state Transition state Basis Set Extrapolation BSE energy BSE Bond lengths Geometry Calculated geometry AIM bond orders One type of bond Rotation Rotational constant Products of moments of inertia Moments of inertia Inertial defects Second moments Point group State symmetry <r2> Sorted by r2 Z-matrix Bad Calculations Bad moment of inertia Bad Calculated Bond Lengths Bad point group Worst molecules Vibrations Frequencies Animated vibrations Anharmonic Zero point energy (ZPE) Scale Factors Scale factors Scale factor uncertainty Calculate a scale factor Why scale vibrations Set scaling factors Bad Calculations Bad Vib. HF vs MP2 Bad vib. Calc. vs exp. Big anharmonicity Electrostatics Charges Mulliken CHELP Aim ESP Dipole Dipole Dipole angle Dipole calculation types Quadrupole Polarizability Spin Spin density Entropy and Heat Capacity Entropy Reaction entropy Heat Capacity Reaction Reaction Energy 0K Reaction Energy 298K Isodesmic reactions Transition State Transition state Transition state frequencies Transition state geometries IRC Lookup by property By frequency Comparisons Geometry Bonds, angles Bond, angle, or dihedral DFT grid size on point group DFT grid on bond length Core correlation - bond length Same bond/angle many molecules Isoelectronic diatomics Isoelectronic triatomic angles Average bond lengths Rotation Rotational Constants Products of moments of inertia Point group Vibrations Vibrations 2 calculations Frequency differences One frequency Zero point energy Intensity Intensity for one mode Vibrational intensities Reduced mass comparison Anharmonic Triatomic Scale factors Energy Reaction Reaction Energy 0K Reaction Energy 298K Atomization 0K Atomization 298K Single point vs optimized DFT grid size on energy Semiempirical enthalpy Internal rotation Similar molecules Conformation Sets of isomers Sets of tautomers Isomers Entropy Entropy Heat capacity Entropy of several molecules Integrated heat capacity Reaction entropy Electrostatics Dipole Polarizability Several molecules Quadrupole Ion Compare Ionzation energy Koopman ionization energy Koopman IE for a few molecules Compare Electron affinity Compare Proton affinity Protonation Site Resources Info on Results Calculations Done Method and basis set List molecules One molecule Multiple conformers, states Multiple conformers, states Basis functions used I/O files Input/output files MOL file Z-matrix wfn files Glossary Conversion Forms B to I, I to B Angle formulas Integrated heat Capacity Calculating Enthalpy Links NIST Links NIST webbook bibliographic data CCCBDB Experimental data External links Basis Set Exchange Computational Chemistry List Thermochemistry in Gaussian Minnesota Database Collection Benchmark Energy and Geometry Point Groups Thermochemistry Thermochemistry Molecules with good enthalpy A → B + C Reference states Tutorials Vibrations Why scale vibrations Zero-point energies Entropy Methyl rotor entropy Entropy and conformations Energy Getting enthalpy of formation Vertical vs adiabatic IE Thermo from calculations Electrostatics Dipole parts by point group Quadrupoles Geometry Angle formulas Cost Cost Comparison Timings Comparison Bad Calculations Geometry Bad moment of inertia Bad Calculated Bond Lengths Bad point group Worst molecules Vibrations Bad vib. Calc. vs exp. Bad Vib. HF vs MP2 Bad scale factors Low excited states Oddities NaCN Is not linear FAQ Help Units Choose Units Energy Bond length Rotational Constant Moment of Inertia Dipole and Quadrupole Polarizability Explanations Hartree cm-1 Debye Credits Just show me Show me a calculated geometry Summary Using older interface Limit Basis sets Method options List Recent molecules Choose a few Molecules Number of atoms By heavy atoms Diatomics InChI Deuterated Dimers Geometry Point group Point group count Bonds types Isodesmic reactions Bad point group Multiple conformers, states Vibrations Big anharmonicity Energy Enthalpy at 0 Kelvin Similar molecules Similar Isomers Cis/trans Tautomers Multiple conformers, states Ions, Dipoles, etc. List Ions Ionization changes point group Dipole Quadrupole Polarizability Proton Affinities Index of CCCBDB Feedback Error form Wants
You are here: Calculated > Energy > Optimized > Energy

Number	Element	Mulliken
1	N	-0.365
2	C	0.101
3	N	-0.332
4	C	0.398
5	C	0.106
6	C	0.046
7	N	-0.390
8	C	0.259
9	N	-0.692
10	H	0.168
11	H	0.173
12	H	0.186
13	H	0.344

	x	y	z	Total
	2.239	3.078	0.000	3.806
CHELPG
AIM
ESP

	x	y	z
x	14.614	1.371	0.000
y	1.371	11.320	0.000
z	0.000	0.000	3.823

<r²>	258.508
(<r²>)^1/2	16.078

All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/6-31G

States and conformations

All results from a given calculation for C₅H₄N₄ (purine)