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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: PBEPBE/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at PBEPBE/6-31G*
 hartrees
Energy at 0K-595.467708
Energy at 298.15K-595.480373
Nuclear repulsion energy285.282283
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3059 3015 34.74      
2 A' 2997 2954 40.85      
3 A' 2980 2938 37.85      
4 A' 2974 2932 29.66      
5 A' 2966 2923 18.09      
6 A' 2951 2909 7.90      
7 A' 2621 2583 28.63      
8 A' 1493 1472 5.40      
9 A' 1484 1463 0.25      
10 A' 1471 1450 1.25      
11 A' 1468 1447 1.84      
12 A' 1463 1442 0.51      
13 A' 1395 1375 2.53      
14 A' 1375 1355 0.01      
15 A' 1346 1326 12.79      
16 A' 1280 1262 10.17      
17 A' 1218 1200 22.05      
18 A' 1118 1102 3.91      
19 A' 1061 1046 0.18      
20 A' 1049 1034 1.52      
21 A' 1017 1003 0.62      
22 A' 896 883 0.99      
23 A' 842 830 1.56      
24 A' 726 716 4.29      
25 A' 426 420 1.52      
26 A' 339 334 0.37      
27 A' 241 237 1.34      
28 A' 114 112 1.17      
29 A" 3053 3009 72.04      
30 A" 3051 3008 9.55      
31 A" 3018 2975 32.28      
32 A" 3003 2960 7.33      
33 A" 2981 2938 1.56      
34 A" 1484 1463 7.27      
35 A" 1306 1288 0.25      
36 A" 1304 1285 0.64      
37 A" 1260 1242 0.31      
38 A" 1196 1179 0.11      
39 A" 1061 1046 2.38      
40 A" 947 933 0.06      
41 A" 828 816 2.26      
42 A" 749 738 0.21      
43 A" 726 715 5.68      
44 A" 252 248 0.01      
45 A" 174 171 15.60      
46 A" 148 146 2.81      
47 A" 96 94 4.46      
48 A" 66 65 2.27      

Unscaled Zero Point Vibrational Energy (zpe) 34535.2 cm-1
Scaled (by 0.9857) Zero Point Vibrational Energy (zpe) 34041.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/6-31G*
ABC
0.47092 0.02636 0.02557

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.425 1.686 0.000
H2 -3.677 1.153 0.000
C3 -1.506 0.082 0.000
H4 -1.789 -0.499 0.895
H5 -1.789 -0.499 -0.895
C6 0.000 0.358 0.000
H7 0.261 0.967 -0.887
H8 0.261 0.967 0.887
C9 0.830 -0.935 0.000
H10 0.562 -1.545 0.885
H11 0.562 -1.545 -0.885
C12 2.345 -0.681 0.000
H13 2.611 -0.070 0.884
H14 2.611 -0.070 -0.884
C15 3.170 -1.973 0.000
H16 2.949 -2.588 0.891
H17 2.949 -2.588 -0.891
H18 4.253 -1.761 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.36041.84812.44482.44482.76452.91812.91814.17864.48844.48845.32475.40605.40606.68506.92376.92377.5149
H21.36042.42002.66292.66293.76144.04024.04024.96665.10205.10206.29456.46616.46617.52647.66067.66068.4479
C31.84812.42001.10361.10361.53142.16612.16612.54802.77682.77683.92614.21394.21395.10805.27005.27006.0470
H42.44482.66291.10361.78982.17613.08612.51992.80192.57363.12944.23354.42084.76535.25045.17825.47746.2369
H52.44482.66291.10361.78982.17612.51993.08612.80193.12942.57364.23354.76534.42085.25045.47745.17826.2369
C62.76453.76141.53142.17612.17611.10681.10681.53632.17322.17322.56482.78972.78973.93494.26264.26264.7517
H72.91814.04022.16613.08612.51991.10681.77342.17403.08922.53032.80113.12012.56894.23014.79844.45714.9159
H82.91814.04022.16612.51993.08611.10681.77342.17402.53033.08922.80112.56893.12014.23014.45714.79844.9159
C94.17864.96662.54802.80192.80191.53632.17402.17401.10851.10851.53572.16812.16812.56002.83142.83143.5212
H104.48845.10202.77682.57363.12942.17323.08922.53031.10851.77092.16992.52463.08312.78712.60473.15273.8016
H114.48845.10202.77683.12942.57362.17322.53033.08921.10851.77092.16993.08312.52462.78713.15272.60473.8016
C125.32476.29453.92614.23354.23352.56482.80112.80111.53572.16992.16991.10731.10731.53292.18972.18972.1925
H135.40606.46614.21394.42084.76532.78973.12012.56892.16812.52463.08311.10731.76842.17152.54063.09922.5174
H145.40606.46614.21394.76534.42082.78972.56893.12012.16813.08312.52461.10731.76842.17153.09922.54062.5174
C156.68507.52645.10805.25045.25043.93494.23014.23012.56002.78712.78711.53292.17152.17151.10481.10481.1034
H166.92377.66065.27005.17825.47744.26264.79844.45712.83142.60473.15272.18972.54063.09921.10481.78141.7826
H176.92377.66065.27005.47745.17824.26264.45714.79842.83143.15272.60472.18973.09922.54061.10481.78141.7826
H187.51498.44796.04706.23696.23694.75174.91594.91593.52123.80163.80162.19252.51742.51741.10341.78261.7826

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 109.229 S1 C3 H5 109.229
S1 C3 C6 109.415 H2 S1 C3 96.738
C3 C6 H7 109.326 C3 C6 H8 109.326
C3 C6 C9 112.322 H4 C3 H5 108.364
H4 C3 C6 110.289 H5 C3 C6 110.289
C6 C9 H10 109.448 C6 C9 H11 109.448
C6 C9 C12 113.211 H7 C6 H8 106.477
H7 C6 C9 109.609 H8 C6 C9 109.609
C9 C12 H13 109.156 C9 C12 H14 109.156
C9 C12 C15 113.075 H10 C9 H11 106.030
H10 C9 C12 109.226 H11 C9 C12 109.226
C12 C15 H16 111.190 C12 C15 H17 111.190
C12 C15 H18 111.496 H13 C12 H14 105.976
H13 C12 C15 109.615 H14 C12 C15 109.615
H16 C15 H17 107.462 H16 C15 H18 107.656
H17 C15 H18 107.656
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.095      
2 H 0.102      
3 C -0.439      
4 H 0.186      
5 H 0.186      
6 C -0.294      
7 H 0.166      
8 H 0.166      
9 C -0.277      
10 H 0.145      
11 H 0.145      
12 C -0.280      
13 H 0.149      
14 H 0.149      
15 C -0.484      
16 H 0.157      
17 H 0.157      
18 H 0.159      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.336 -1.825 0.000 1.856
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -44.399 3.639 0.000
y 3.639 -51.575 0.000
z 0.000 0.000 -48.248
Traceless
 xyz
x 5.513 3.639 0.000
y 3.639 -5.251 0.000
z 0.000 0.000 -0.261
Polar
3z2-r2-0.523
x2-y27.176
xy3.639
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 12.948 -1.998 0.000
y -1.998 10.705 0.000
z 0.000 0.000 8.620


<r2> (average value of r2) Å2
<r2> 415.470
(<r2>)1/2 20.383