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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HF/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HF/6-31G*
 hartrees
Energy at 0K-409.471455
Energy at 298.15K-409.479751
HF Energy-409.471455
Nuclear repulsion energy416.767930
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3908 3511 127.57      
2 A' 3448 3098 4.21      
3 A' 3403 3057 26.32      
4 A' 3390 3046 18.48      
5 A' 1838 1651 121.30      
6 A' 1803 1620 160.22      
7 A' 1724 1549 43.69      
8 A' 1633 1467 12.40      
9 A' 1564 1405 127.26      
10 A' 1562 1403 12.77      
11 A' 1498 1346 72.84      
12 A' 1432 1287 24.86      
13 A' 1410 1267 9.40      
14 A' 1314 1180 5.83      
15 A' 1280 1150 49.52      
16 A' 1232 1107 7.71      
17 A' 1171 1052 27.06      
18 A' 1024 920 1.24      
19 A' 989 888 18.25      
20 A' 872 784 22.51      
21 A' 713 641 0.17      
22 A' 615 553 3.57      
23 A' 481 432 13.43      
24 A" 1132 1017 0.58      
25 A" 1070 961 4.15      
26 A" 1028 923 2.39      
27 A" 890 800 18.68      
28 A" 721 648 19.85      
29 A" 671 603 19.82      
30 A" 550 494 141.47      
31 A" 463 416 17.34      
32 A" 278 250 0.05      
33 A" 253 227 6.45      

Unscaled Zero Point Vibrational Energy (zpe) 22677.8 cm-1
Scaled (by 0.8985) Zero Point Vibrational Energy (zpe) 20376.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/6-31G*
ABC
0.14170 0.05947 0.04189

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.803 -1.242 0.000
C2 -2.095 0.067 0.000
N3 -1.267 1.084 0.000
C4 0.000 0.695 0.000
C5 0.444 -0.618 0.000
C6 -0.539 -1.596 0.000
N7 1.825 -0.673 0.000
C8 2.178 0.563 0.000
N9 1.126 1.452 0.000
H10 -3.144 0.304 0.000
H11 -0.320 -2.650 0.000
H12 3.200 0.887 0.000
H13 1.173 2.445 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34122.38672.64662.33251.31253.67304.37163.98032.04602.04565.43724.7381
C21.34121.31142.18752.63002.27743.98994.30233.50691.07463.24605.35834.0415
N32.38671.31141.32532.41282.77673.55643.48442.42152.03203.85214.47122.7937
C42.64662.18751.32531.38562.35372.28092.18221.35723.16783.36043.20552.1064
C52.33252.63002.41281.38561.38731.38242.09782.17953.70402.17133.13963.1479
C61.31252.27742.77672.35371.38732.53863.47083.47383.22351.07684.48844.3886
N73.67303.98993.55642.28091.38242.53861.28512.23725.06392.91712.07883.1853
C84.37164.30233.48442.18222.09783.47081.28511.37765.32804.06961.07172.1338
N93.98033.50692.42151.35722.17953.47382.23721.37764.42154.34982.14930.9936
H102.04601.07462.03203.16783.70403.22355.06395.32804.42154.08686.37004.8179
H112.04563.24603.85213.36042.17131.07682.91714.06964.34984.08684.98945.3090
H125.43725.35834.47123.20553.13964.48842.07881.07172.14936.37004.98942.5569
H134.73814.04152.79372.10643.14794.38863.18532.13380.99364.81795.30902.5569

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.252 N1 C2 H10 115.316
N1 C6 C5 119.501 N1 C6 H11 117.431
C2 N1 C6 118.220 C2 N3 C4 112.122
N3 C2 H10 116.432 N3 C4 C5 125.739
N3 C4 N9 129.030 C4 C5 C6 116.166
C4 C5 N7 110.982 C4 N9 C8 105.863
C4 N9 H13 126.590 C5 C4 N9 105.231
C5 C6 H11 123.068 C5 N7 C8 103.645
C6 C5 N7 132.852 N7 C8 N9 114.279
N7 C8 H12 123.526 C8 N9 H13 127.547
N9 C8 H12 122.195
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.546      
2 C 0.253      
3 N -0.590      
4 C 0.646      
5 C 0.106      
6 C 0.104      
7 N -0.547      
8 C 0.304      
9 N -0.827      
10 H 0.215      
11 H 0.234      
12 H 0.234      
13 H 0.414      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.247 2.900 0.000 3.668
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.096 6.390 0.000
y 6.390 -47.420 0.000
z 0.000 0.000 -52.047
Traceless
 xyz
x -0.362 6.390 0.000
y 6.390 3.651 0.000
z 0.000 0.000 -3.289
Polar
3z2-r2-6.579
x2-y2-2.675
xy6.390
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.144 1.313 0.000
y 1.313 10.743 0.000
z 0.000 0.000 4.105


<r2> (average value of r2) Å2
<r2> 249.920
(<r2>)1/2 15.809