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All results from a given calculation for C5H4N4 (purine)

using model chemistry: BLYP/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at BLYP/6-31G*
 hartrees
Energy at 0K-411.823568
Energy at 298.15K-411.831137
HF Energy-411.823568
Nuclear repulsion energy408.195835
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3525 3497 51.09      
2 A' 3181 3155 2.37      
3 A' 3113 3088 24.12      
4 A' 3097 3072 21.31      
5 A' 1582 1569 54.66      
6 A' 1547 1535 55.49      
7 A' 1461 1449 23.78      
8 A' 1436 1424 3.01      
9 A' 1382 1370 43.82      
10 A' 1371 1359 9.37      
11 A' 1320 1309 36.66      
12 A' 1274 1264 45.30      
13 A' 1250 1240 7.50      
14 A' 1238 1228 45.98      
15 A' 1164 1155 6.46      
16 A' 1089 1080 4.81      
17 A' 1043 1034 13.93      
18 A' 911 904 1.35      
19 A' 879 872 12.08      
20 A' 778 771 11.99      
21 A' 637 632 0.48      
22 A' 551 547 3.18      
23 A' 429 425 11.14      
24 A" 946 938 0.53      
25 A" 896 889 7.48      
26 A" 822 816 5.16      
27 A" 777 771 8.16      
28 A" 642 637 3.59      
29 A" 602 597 23.13      
30 A" 496 492 97.05      
31 A" 399 396 3.65      
32 A" 235 233 0.31      
33 A" 223 221 3.40      

Unscaled Zero Point Vibrational Energy (zpe) 20147.0 cm-1
Scaled (by 0.9919) Zero Point Vibrational Energy (zpe) 19983.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/6-31G*
ABC
0.13488 0.05742 0.04027

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.841 -1.273 0.000
C2 -2.144 0.056 0.000
N3 -1.289 1.094 0.000
C4 0.000 0.706 0.000
C5 0.458 -0.638 0.000
C6 -0.545 -1.629 0.000
N7 1.859 -0.675 0.000
C8 2.222 0.593 0.000
N9 1.147 1.485 0.000
H10 -3.213 0.300 0.000
H11 -0.304 -2.699 0.000
H12 3.253 0.948 0.000
H13 1.185 2.502 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36292.42992.70322.38551.34463.74824.47094.06652.08682.09665.55724.8383
C21.36291.34462.24082.69372.32344.06944.39903.58831.09583.31285.47044.1315
N32.42991.34461.34592.46032.82263.61063.54642.46742.08073.91824.54422.8471
C42.70322.24081.34591.42082.39822.31582.22471.38653.23813.41893.26182.1516
C52.38552.69372.46031.42081.40981.40102.15072.23263.78902.19723.21353.2235
C61.34462.32342.82262.39821.40982.58613.54833.54423.29231.09654.58954.4788
N73.74824.06943.61062.31581.40102.58611.31852.27435.16432.96262.13943.2475
C84.47094.39903.54642.22472.15073.54831.31851.39705.44234.14941.09052.1725
N94.06653.58832.46741.38652.23263.54422.27431.39704.51784.42882.17321.0175
H102.08681.09582.08073.23813.78903.29235.16435.44234.51784.17756.49784.9183
H112.09663.31283.91823.41892.19721.09652.96264.14944.42884.17755.09465.4101
H125.55725.47044.54423.26183.21354.58952.13941.09052.17326.49785.09462.5864
H134.83834.13152.84712.15163.22354.47883.24752.17251.01754.91835.41012.5864

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.653 N1 C2 H10 115.719
N1 C6 C5 119.989 N1 C6 H11 118.027
C2 N1 C6 118.214 C2 N3 C4 112.783
N3 C2 H10 116.627 N3 C4 C5 125.538
N3 C4 N9 129.105 C4 C5 C6 115.823
C4 C5 N7 110.308 C4 N9 C8 106.117
C4 N9 H13 126.330 C5 C4 N9 105.357
C5 C6 H11 121.984 C5 N7 C8 104.491
C6 C5 N7 133.870 N7 C8 N9 113.728
N7 C8 H12 124.994 C8 N9 H13 127.553
N9 C8 H12 121.278
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.369      
2 C 0.146      
3 N -0.442      
4 C 0.484      
5 C 0.257      
6 C 0.016      
7 N -0.468      
8 C 0.224      
9 N -0.584      
10 H 0.131      
11 H 0.135      
12 H 0.149      
13 H 0.321      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.183 2.932 0.000 3.655
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.209 6.000 0.000
y 6.000 -46.928 0.000
z 0.000 0.000 -51.074
Traceless
 xyz
x -1.209 6.000 0.000
y 6.000 3.714 0.000
z 0.000 0.000 -2.505
Polar
3z2-r2-5.010
x2-y2-3.282
xy6.000
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.427 1.437 0.000
y 1.437 11.810 0.000
z 0.000 0.000 4.218


<r2> (average value of r2) Å2
<r2> 258.388
(<r2>)1/2 16.074