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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3PW91/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3PW91/6-31G*
 hartrees
Energy at 0K-411.790985
Energy at 298.15K-411.798824
HF Energy-411.790985
Nuclear repulsion energy412.788315
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3PW91/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3671 3512 86.22      
2 A' 3272 3131 1.42      
3 A' 3210 3071 20.13      
4 A' 3197 3059 16.82      
5 A' 1679 1606 64.46      
6 A' 1639 1568 76.98      
7 A' 1550 1483 28.55      
8 A' 1505 1440 3.77      
9 A' 1450 1388 60.80      
10 A' 1436 1374 18.65      
11 A' 1385 1325 64.67      
12 A' 1335 1277 14.86      
13 A' 1327 1270 18.06      
14 A' 1297 1241 32.52      
15 A' 1216 1163 7.10      
16 A' 1148 1098 5.90      
17 A' 1100 1053 13.56      
18 A' 948 907 1.35      
19 A' 914 874 12.26      
20 A' 813 777 14.31      
21 A' 660 631 0.45      
22 A' 569 545 3.96      
23 A' 446 426 12.69      
24 A" 992 949 0.44      
25 A" 940 899 9.39      
26 A" 877 839 5.77      
27 A" 810 775 9.24      
28 A" 667 638 5.52      
29 A" 624 597 26.56      
30 A" 536 513 113.34      
31 A" 417 399 3.22      
32 A" 247 236 0.28      
33 A" 231 221 4.38      

Unscaled Zero Point Vibrational Energy (zpe) 21054.4 cm-1
Scaled (by 0.9567) Zero Point Vibrational Energy (zpe) 20142.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3PW91/6-31G*
ABC
0.13809 0.05867 0.04118

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3PW91/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.815 -1.253 0.000
C2 -2.100 0.068 0.000
N3 -1.269 1.101 0.000
C4 0.000 0.703 0.000
C5 0.453 -0.626 0.000
C6 -0.539 -1.607 0.000
N7 1.833 -0.691 0.000
C8 2.180 0.567 0.000
N9 1.128 1.465 0.000
H10 -3.158 0.308 0.000
H11 -0.314 -2.671 0.000
H12 3.208 0.901 0.000
H13 1.172 2.473 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35102.41692.66882.35301.32433.69094.39044.00582.05872.06555.46544.7751
C21.35101.32622.19392.64492.28954.00484.30893.51691.08493.26995.37264.0603
N32.41691.32621.33002.43862.80553.58213.49022.42422.04883.89184.48132.7994
C42.66882.19391.33001.40402.37302.30252.18431.36063.18253.38933.21382.1220
C52.35302.64492.43861.40401.39561.38152.09942.19663.72912.18453.14993.1806
C61.32432.28952.80552.37301.39562.54293.48203.49523.24421.08754.50924.4243
N73.69094.00483.58212.30251.38152.54291.30512.26745.08922.92062.10343.2316
C84.39044.30893.49022.18432.09943.48201.30511.38285.34424.08761.08052.1557
N94.00583.51692.42421.36062.19663.49522.26741.38284.43904.37992.15491.0091
H102.05871.08492.04883.18253.72913.24425.08925.34424.43904.11876.39324.8405
H112.06553.26993.89183.38932.18451.08752.92064.08764.37994.11875.01625.3541
H125.46545.37264.48133.21383.14994.50922.10341.08052.15496.39325.01622.5722
H134.77514.06032.79942.12203.18064.42433.23162.15571.00914.84055.35412.5722

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.053 N1 C2 H10 114.941
N1 C6 C5 119.762 N1 C6 H11 117.496
C2 N1 C6 117.687 C2 N3 C4 111.375
N3 C2 H10 116.006 N3 C4 C5 126.216
N3 C4 N9 128.575 C4 C5 C6 115.907
C4 C5 N7 111.498 C4 N9 C8 105.535
C4 N9 H13 126.497 C5 C4 N9 105.209
C5 C6 H11 122.742 C5 N7 C8 102.747
C6 C5 N7 132.595 N7 C8 N9 115.011
N7 C8 H12 123.424 C8 N9 H13 127.968
N9 C8 H12 121.565
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3PW91/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.423      
2 C 0.145      
3 N -0.488      
4 C 0.542      
5 C 0.199      
6 C 0.025      
7 N -0.500      
8 C 0.224      
9 N -0.679      
10 H 0.184      
11 H 0.195      
12 H 0.204      
13 H 0.370      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.217 2.988 0.000 3.721
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.499 6.188 0.000
y 6.188 -46.305 0.000
z 0.000 0.000 -51.151
Traceless
 xyz
x -0.771 6.188 0.000
y 6.188 4.020 0.000
z 0.000 0.000 -3.249
Polar
3z2-r2-6.497
x2-y2-3.194
xy6.188
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.658 1.340 0.000
y 1.340 11.339 0.000
z 0.000 0.000 4.219


<r2> (average value of r2) Å2
<r2> 253.208
(<r2>)1/2 15.913