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All results from a given calculation for C5H4N4 (purine)

using model chemistry: LSDA/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at LSDA/6-31G*
 hartrees
Energy at 0K-409.698503
Energy at 298.15K-409.706221
HF Energy-409.698503
Nuclear repulsion energy413.597490
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at LSDA/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3555 3489 82.77      
2 A' 3187 3127 0.24      
3 A' 3118 3060 13.78      
4 A' 3103 3045 12.20      
5 A' 1664 1633 57.43      
6 A' 1616 1586 62.58      
7 A' 1522 1493 29.15      
8 A' 1484 1456 3.00      
9 A' 1438 1411 53.57      
10 A' 1398 1372 11.18      
11 A' 1378 1352 77.30      
12 A' 1351 1326 22.17      
13 A' 1301 1277 3.28      
14 A' 1269 1245 21.22      
15 A' 1190 1168 10.05      
16 A' 1136 1115 5.79      
17 A' 1073 1053 11.91      
18 A' 927 910 2.01      
19 A' 894 877 10.71      
20 A' 803 788 14.04      
21 A' 647 635 0.65      
22 A' 557 547 4.88      
23 A' 436 427 13.07      
24 A" 951 933 0.52      
25 A" 905 888 10.16      
26 A" 835 820 3.58      
27 A" 796 781 11.26      
28 A" 657 645 4.22      
29 A" 613 602 28.99      
30 A" 557 547 102.18      
31 A" 401 394 1.19      
32 A" 236 232 0.29      
33 A" 224 220 4.37      

Unscaled Zero Point Vibrational Energy (zpe) 20611.3 cm-1
Scaled (by 0.9813) Zero Point Vibrational Energy (zpe) 20225.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at LSDA/6-31G*
ABC
0.13841 0.05903 0.04138

See section I.F.4 to change rotational constant units
Geometric Data calculated at LSDA/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.808 -1.251 0.000
C2 -2.097 0.065 0.000
N3 -1.266 1.097 0.000
C4 0.000 0.702 0.000
C5 0.453 -0.627 0.000
C6 -0.534 -1.608 0.000
N7 1.825 -0.687 0.000
C8 2.175 0.572 0.000
N9 1.123 1.464 0.000
H10 -3.166 0.306 0.000
H11 -0.305 -2.681 0.000
H12 3.212 0.908 0.000
H13 1.163 2.481 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34822.40992.66182.34501.32253.67644.38023.99492.06622.07455.46464.7702
C21.34821.32502.19202.64232.29003.99384.30223.51071.09493.27995.37594.0576
N32.40991.32501.32572.43382.80233.56843.48032.41642.05783.89844.48172.7952
C42.66182.19201.32571.40412.37172.29352.17871.35663.19023.39733.21862.1250
C52.34502.64232.43381.40411.39191.37372.09852.19543.73652.18963.15763.1880
C61.32252.29002.80232.37171.39192.53303.47763.49053.25401.09734.51314.4275
N73.67643.99383.56842.29351.37372.53301.30652.26235.08832.91792.11363.2363
C84.38024.30223.48032.17872.09853.47761.30651.37925.34704.09061.09022.1607
N93.99493.51072.41641.35662.19543.49052.26231.37924.44184.38402.16191.0181
H102.06621.09492.05783.19023.73653.25405.08835.34704.44184.13626.40594.8439
H112.07453.27993.89843.39732.18961.09732.91794.09064.38404.13625.02515.3669
H125.46465.37594.48173.21863.15764.51312.11361.09022.16196.40595.02512.5834
H134.77024.05762.79522.12503.18804.42753.23632.16071.01814.84395.36692.5834

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.715 N1 C2 H10 115.108
N1 C6 C5 119.499 N1 C6 H11 117.736
C2 N1 C6 118.066 C2 N3 C4 111.569
N3 C2 H10 116.178 N3 C4 C5 126.115
N3 C4 N9 128.543 C4 C5 C6 116.037
C4 C5 N7 111.302 C4 N9 C8 105.573
C4 N9 H13 126.395 C5 C4 N9 105.342
C5 C6 H11 122.765 C5 N7 C8 103.033
C6 C5 N7 132.661 N7 C8 N9 114.750
N7 C8 H12 123.485 C8 N9 H13 128.032
N9 C8 H12 121.765
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at LSDA/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.346      
2 C 0.070      
3 N -0.394      
4 C 0.442      
5 C 0.216      
6 C -0.027      
7 N -0.440      
8 C 0.166      
9 N -0.610      
10 H 0.177      
11 H 0.185      
12 H 0.198      
13 H 0.364      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.225 3.054 0.000 3.778
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.659 6.147 0.000
y 6.147 -46.182 0.000
z 0.000 0.000 -51.145
Traceless
 xyz
x -0.995 6.147 0.000
y 6.147 4.220 0.000
z 0.000 0.000 -3.225
Polar
3z2-r2-6.449
x2-y2-3.477
xy6.147
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.059 1.368 0.000
y 1.368 11.530 0.000
z 0.000 0.000 4.238


<r2> (average value of r2) Å2
<r2> 252.234
(<r2>)1/2 15.882