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All results from a given calculation for C5H4N4 (purine)

using model chemistry: TPSSh/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at TPSSh/6-31G*
 hartrees
Energy at 0K-411.973278
Energy at 298.15K-411.981045
HF Energy-411.973278
Nuclear repulsion energy411.518556
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at TPSSh/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3631 3483 71.05      
2 A' 3271 3138 2.40      
3 A' 3209 3079 23.69      
4 A' 3194 3064 19.25      
5 A' 1653 1586 60.02      
6 A' 1619 1553 71.91      
7 A' 1529 1467 27.54      
8 A' 1490 1430 3.88      
9 A' 1435 1377 63.14      
10 A' 1426 1368 7.84      
11 A' 1371 1315 56.02      
12 A' 1326 1272 26.81      
13 A' 1308 1255 14.47      
14 A' 1287 1235 38.57      
15 A' 1204 1155 6.17      
16 A' 1132 1086 5.41      
17 A' 1089 1045 13.45      
18 A' 937 899 1.09      
19 A' 903 867 12.55      
20 A' 801 769 13.74      
21 A' 651 625 0.47      
22 A' 562 540 3.93      
23 A' 439 421 12.43      
24 A" 987 947 0.41      
25 A" 933 895 9.95      
26 A" 866 831 7.44      
27 A" 797 765 8.16      
28 A" 661 634 3.36      
29 A" 619 594 30.00      
30 A" 528 507 106.75      
31 A" 411 394 2.86      
32 A" 243 233 0.23      
33 A" 229 219 4.21      

Unscaled Zero Point Vibrational Energy (zpe) 20869.4 cm-1
Scaled (by 0.9594) Zero Point Vibrational Energy (zpe) 20022.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at TPSSh/6-31G*
ABC
0.13702 0.05837 0.04093

See section I.F.4 to change rotational constant units
Geometric Data calculated at TPSSh/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.829 -1.262 0.000
C2 -2.126 0.058 0.000
N3 -1.279 1.091 0.000
C4 0.000 0.700 0.000
C5 0.456 -0.634 0.000
C6 -0.541 -1.618 0.000
N7 1.846 -0.673 0.000
C8 2.203 0.586 0.000
N9 1.138 1.473 0.000
H10 -3.187 0.301 0.000
H11 -0.306 -2.681 0.000
H12 3.226 0.942 0.000
H13 1.178 2.483 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35352.41592.68232.36911.33603.72194.43514.03492.07072.08165.51434.8030
C21.35351.33542.22112.67322.30734.03964.36133.55771.08793.28925.42504.0988
N32.41591.33541.33732.44612.80733.58893.51842.44732.06463.89524.50782.8245
C42.68232.22111.33731.40982.38052.30132.20591.37553.21173.39513.23532.1372
C52.36912.67322.44611.40981.40061.39132.13112.21423.76062.18423.18713.1999
C61.33602.30732.80732.38051.40062.56743.51963.51723.26851.08884.55444.4470
N73.72194.03963.58892.30131.39132.56741.30922.25985.12672.94322.12413.2268
C84.43514.36133.51842.20592.13113.51961.30921.38535.39734.11931.08322.1563
N94.03493.55772.44731.37552.21423.51722.25981.38534.48084.39742.15451.0116
H102.07071.08792.06463.21173.76063.26855.12675.39734.48084.14656.44494.8800
H112.08163.28923.89523.39512.18421.08882.94324.11934.39744.14655.05945.3734
H125.51435.42504.50783.23533.18714.55442.12411.08322.15456.44495.05942.5638
H134.80304.09882.82452.13723.19994.44703.22682.15631.01164.88005.37342.5638

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.915 N1 C2 H10 115.598
N1 C6 C5 119.913 N1 C6 H11 117.926
C2 N1 C6 118.156 C2 N3 C4 112.411
N3 C2 H10 116.487 N3 C4 C5 125.827
N3 C4 N9 128.875 C4 C5 C6 115.778
C4 C5 N7 110.487 C4 N9 C8 106.070
C4 N9 H13 126.415 C5 C4 N9 105.297
C5 C6 H11 122.161 C5 N7 C8 104.176
C6 C5 N7 133.735 N7 C8 N9 113.970
N7 C8 H12 124.942 C8 N9 H13 127.516
N9 C8 H12 121.088
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at TPSSh/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.428      
2 C 0.155      
3 N -0.495      
4 C 0.547      
5 C 0.205      
6 C 0.030      
7 N -0.505      
8 C 0.230      
9 N -0.672      
10 H 0.179      
11 H 0.190      
12 H 0.199      
13 H 0.363      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.211 2.971 0.000 3.703
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.889 1.358 0.000
y 1.358 11.502 0.000
z 0.000 0.000 4.233


<r2> (average value of r2) Å2
<r2> 254.538
(<r2>)1/2 15.954