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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: BLYP/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at BLYP/6-31G*
 hartrees
Energy at 0K-398.829886
Energy at 298.15K-398.839681
HF Energy-398.829886
Nuclear repulsion energy321.563693
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3512 3484 8.37      
2 A 3507 3479 92.38      
3 A 3432 3404 0.09      
4 A 3347 3319 0.88      
5 A 3043 3018 27.02      
6 A 2964 2940 15.84      
7 A 2877 2854 75.09      
8 A 1718 1704 203.52      
9 A 1658 1644 23.95      
10 A 1496 1484 0.86      
11 A 1428 1417 72.01      
12 A 1363 1352 0.73      
13 A 1361 1350 10.07      
14 A 1319 1308 28.57      
15 A 1294 1283 10.30      
16 A 1211 1201 8.05      
17 A 1165 1156 3.75      
18 A 1134 1125 149.59      
19 A 1099 1090 107.93      
20 A 1042 1034 105.32      
21 A 1001 992 25.28      
22 A 951 944 9.27      
23 A 872 865 173.01      
24 A 777 771 23.02      
25 A 706 700 38.95      
26 A 640 634 70.36      
27 A 580 575 187.51      
28 A 541 537 5.35      
29 A 509 505 33.20      
30 A 405 402 7.95      
31 A 304 302 3.92      
32 A 291 288 9.58      
33 A 245 243 26.76      
34 A 223 221 11.96      
35 A 160 159 1.79      
36 A 20 20 0.26      

Unscaled Zero Point Vibrational Energy (zpe) 24096.7 cm-1
Scaled (by 0.9919) Zero Point Vibrational Energy (zpe) 23901.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/6-31G*
ABC
0.11683 0.07740 0.04911

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/6-31G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.798 -0.547 0.004
O2 2.090 -0.332 -0.372
O3 0.431 -1.577 0.556
C4 -0.094 0.680 -0.309
C5 -1.540 0.435 0.193
O6 -2.143 -0.711 -0.391
N7 0.427 1.949 0.230
H8 2.601 -1.137 -0.134
H9 -0.133 0.771 -1.408
H10 -1.529 0.379 1.301
H11 -2.146 1.308 -0.088
H12 -1.674 -1.483 -0.018
H13 1.335 2.182 -0.179
H14 0.553 1.892 1.245

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.36261.22571.54892.54262.97162.53391.90172.14432.82033.48132.64312.78702.7475
O21.36262.27292.40853.75284.24972.88730.98192.68944.05004.55193.95162.63243.1506
O31.22572.27292.47372.83962.87543.54192.31973.11352.86703.92212.18303.93583.5390
C41.54892.40852.47371.54932.47761.47433.25491.10412.17722.15732.69402.07722.0742
C52.54263.75282.83961.54931.42062.48244.44082.15781.11021.09981.93423.38422.7585
O62.97164.24972.87542.47761.42063.75074.76942.69712.10442.04240.97724.52864.0889
N72.53392.88733.54191.47432.48243.75073.79252.09412.72732.67064.03181.02281.0245
H81.90170.98192.31973.25494.44084.76943.79253.56884.62705.33994.29003.55213.9074
H92.14432.68943.11351.10412.15782.69712.09413.56883.07332.46703.06462.37772.9609
H102.82034.05002.86702.17721.11022.10442.72734.62703.07331.78212.28633.69372.5740
H113.48134.55193.92212.15731.09982.04242.67065.33992.46701.78212.83223.59013.0664
H122.64313.95162.18302.69401.93420.97724.03184.29003.06462.28632.83224.74434.2358
H132.78702.63243.93582.07723.38424.52861.02283.55212.37773.69373.59014.74431.6507
H142.74753.15063.53902.07422.75854.08891.02453.90742.96092.57403.06644.23581.6507

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.302 C1 C4 C5 110.302
C1 C4 N7 113.869 C1 C4 H9 106.650
O2 C1 O3 122.753 O2 C1 C4 111.471
O3 C1 C4 125.738 C4 C5 O6 112.998
C4 C5 H10 108.777 C4 C5 H11 107.835
C4 N7 H13 111.294 C4 N7 H14 110.929
C5 C4 N7 110.345 C5 C4 H9 107.635
C5 O6 H12 106.067 O6 C5 H10 111.930
O6 C5 H11 107.585 N7 C4 H9 107.757
H10 C5 H11 107.485 H13 N7 H14 107.463
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.530      
2 O -0.525      
3 O -0.446      
4 C -0.071      
5 C -0.013      
6 O -0.590      
7 N -0.657      
8 H 0.390      
9 H 0.167      
10 H 0.100      
11 H 0.147      
12 H 0.388      
13 H 0.297      
14 H 0.283      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.494 0.221 0.688 3.568
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.610 -2.217 -0.738
y -2.217 -44.391 0.909
z -0.738 0.909 -39.205
Traceless
 xyz
x 0.188 -2.217 -0.738
y -2.217 -3.983 0.909
z -0.738 0.909 3.795
Polar
3z2-r27.590
x2-y22.781
xy-2.217
xz-0.738
yz0.909


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.427 0.157 0.017
y 0.157 7.938 -0.041
z 0.017 -0.041 5.599


<r2> (average value of r2) Å2
<r2> 221.142
(<r2>)1/2 14.871