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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: CCD/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at CCD/6-31G*
 hartrees
Energy at 0K-397.825990
Energy at 298.15K-397.836147
HF Energy-396.711705
Nuclear repulsion energy325.330024
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at CCD/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3787 3585 52.40      
2 A 3735 3535 74.91      
3 A 3599 3406 2.81      
4 A 3502 3315 0.82      
5 A 3165 2996 19.08      
6 A 3101 2935 10.33      
7 A 3044 2882 42.99      
8 A 1887 1786 240.12      
9 A 1732 1639 38.75      
10 A 1562 1478 2.26      
11 A 1481 1402 40.81      
12 A 1459 1381 38.00      
13 A 1443 1366 44.44      
14 A 1422 1346 5.40      
15 A 1368 1295 9.55      
16 A 1282 1213 21.21      
17 A 1236 1170 67.47      
18 A 1214 1149 172.94      
19 A 1180 1117 18.72      
20 A 1136 1075 89.39      
21 A 1071 1013 46.07      
22 A 1030 975 2.49      
23 A 944 893 197.06      
24 A 839 794 17.14      
25 A 761 720 32.30      
26 A 646 612 114.37      
27 A 596 564 10.76      
28 A 552 523 242.90      
29 A 527 499 9.43      
30 A 454 429 6.72      
31 A 312 295 11.18      
32 A 302 286 23.61      
33 A 276 261 24.25      
34 A 225 213 1.80      
35 A 176 166 3.23      
36 A 39 37 1.04      

Unscaled Zero Point Vibrational Energy (zpe) 25540.3 cm-1
Scaled (by 0.9465) Zero Point Vibrational Energy (zpe) 24173.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at CCD/6-31G*
ABC
0.11897 0.07803 0.05155

See section I.F.4 to change rotational constant units
Geometric Data calculated at CCD/6-31G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.781 -0.543 0.005
O2 2.061 -0.337 -0.366
O3 0.408 -1.562 0.549
C4 -0.091 0.671 -0.309
C5 -1.516 0.444 0.195
O6 -2.116 -0.693 -0.388
N7 0.437 1.922 0.227
H8 2.563 -1.139 -0.132
H9 -0.130 0.759 -1.403
H10 -1.504 0.386 1.297
H11 -2.112 1.317 -0.087
H12 -1.664 -1.467 -0.019
H13 1.343 2.138 -0.183
H14 0.567 1.854 1.235

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34881.21381.52732.50702.92712.49911.88402.12312.78483.44042.61392.74582.7028
O21.34882.25212.37713.70414.19232.84500.97432.66074.00034.49783.90852.58393.0979
O31.21382.25212.44362.80132.82853.49912.29973.07982.83003.87802.15003.88593.4877
C41.52732.37712.44361.52872.44321.45993.21701.09852.15852.13362.67082.05452.0534
C52.50703.70412.80131.52871.41202.44954.38732.13891.10291.09401.92883.34402.7216
O62.92714.19232.82852.44321.41203.70634.70702.66102.09202.03220.96964.47404.0399
N72.49912.84503.49911.45992.44953.70633.74402.08212.69722.63903.99551.01711.0187
H81.88400.97432.29973.21704.38734.70703.74403.53124.57285.28094.24133.49723.8483
H92.12312.66073.07981.09852.13892.66102.08213.53123.05262.44403.03732.35792.9408
H102.78484.00032.83002.15851.10292.09202.69724.57283.05261.77462.27783.65602.5398
H113.44044.49783.87802.13361.09402.03222.63905.28092.44401.77462.82043.55223.0355
H122.61393.90852.15002.67081.92880.96963.99554.24133.03732.27782.82044.69734.1927
H132.74582.58393.88592.05453.34404.47401.01713.49722.35793.65603.55224.69731.6415
H142.70283.09793.48772.05342.72164.03991.01873.84832.94082.53983.03554.19271.6415

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.284 C1 C4 C5 110.239
C1 C4 N7 113.543 C1 C4 H9 106.771
O2 C1 O3 122.915 O2 C1 C4 111.330
O3 C1 C4 125.728 C4 C5 O6 112.304
C4 C5 H10 109.145 C4 C5 H11 107.732
C4 N7 H13 110.814 C4 N7 H14 110.616
C5 C4 N7 110.072 C5 C4 H9 107.882
C5 O6 H12 106.694 O6 C5 H10 111.996
O6 C5 H11 107.702 N7 C4 H9 108.109
H10 C5 H11 107.762 H13 N7 H14 107.477
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability