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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B97D3/6-311+G(3df,2p)

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B97D3/6-311+G(3df,2p)
 hartrees
Energy at 0K-411.816563
Energy at 298.15K-411.824248
HF Energy-411.816563
Nuclear repulsion energy411.275680
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/6-311+G(3df,2p)
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3590 3543 62.64      
2 A' 3182 3140 0.84      
3 A' 3114 3074 15.28      
4 A' 3100 3059 18.02      
5 A' 1596 1576 61.70      
6 A' 1563 1543 68.31      
7 A' 1466 1447 20.86      
8 A' 1441 1422 1.11      
9 A' 1389 1371 38.74      
10 A' 1369 1352 19.36      
11 A' 1331 1313 38.64      
12 A' 1278 1261 46.90      
13 A' 1257 1240 8.21      
14 A' 1244 1228 44.57      
15 A' 1172 1157 5.28      
16 A' 1104 1090 6.16      
17 A' 1045 1032 18.64      
18 A' 927 915 0.94      
19 A' 890 878 11.61      
20 A' 792 781 11.03      
21 A' 650 641 0.33      
22 A' 561 554 2.87      
23 A' 436 430 11.67      
24 A" 956 943 0.22      
25 A" 906 894 10.39      
26 A" 837 827 6.78      
27 A" 786 776 9.99      
28 A" 647 639 5.61      
29 A" 604 597 21.27      
30 A" 509 502 83.80      
31 A" 397 392 2.19      
32 A" 232 229 0.74      
33 A" 217 214 4.03      

Unscaled Zero Point Vibrational Energy (zpe) 20293.3 cm-1
Scaled (by 0.987) Zero Point Vibrational Energy (zpe) 20029.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/6-311+G(3df,2p)
ABC
0.13740 0.05814 0.04085

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/6-311+G(3df,2p)

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.840 -1.243 0.000
C2 -2.127 0.072 0.000
N3 -1.266 1.103 0.000
C4 0.000 0.703 0.000
C5 0.450 -0.642 0.000
C6 -0.552 -1.612 0.000
N7 1.839 -0.689 0.000
C8 2.211 0.569 0.000
N9 1.151 1.461 0.000
H10 -3.183 0.331 0.000
H11 -0.327 -2.677 0.000
H12 3.237 0.917 0.000
H13 1.197 2.469 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34632.41562.67812.36731.33973.72014.43834.03212.06982.08425.51704.7962
C21.34631.34312.21842.67352.30564.03804.36673.55991.08783.28585.42964.0978
N32.41561.34311.32802.44702.80723.58513.51842.44342.06673.89504.50662.8163
C42.67812.21841.32801.41742.37912.30622.21541.37823.20493.39553.24362.1337
C52.36732.67352.44701.41741.39431.38992.13762.21643.76092.17873.19313.1991
C61.33972.30562.80722.37911.39432.56233.52013.51283.27101.08884.55474.4396
N73.72014.03803.58512.30621.38992.56231.31242.25765.12472.93972.12933.2231
C84.43834.36673.51842.21542.13763.52011.31241.38575.40004.12091.08252.1541
N94.03213.55992.44341.37822.21643.51282.25761.38574.47904.39402.15551.0092
H102.06981.08782.06673.20493.76093.27105.12475.40004.47904.14826.44654.8739
H112.08423.28583.89503.39552.17871.08882.93974.12094.39404.14825.06135.3670
H125.51705.42964.50663.24363.19314.55472.12931.08252.15556.44655.06132.5633
H134.79624.09782.81632.13373.19914.43963.22312.15411.00924.87395.36702.5633

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.047 N1 C2 H10 115.737
N1 C6 C5 119.987 N1 C6 H11 117.893
C2 N1 C6 118.047 C2 N3 C4 112.160
N3 C2 H10 116.216 N3 C4 C5 126.057
N3 C4 N9 129.038 C4 C5 C6 115.702
C4 C5 N7 110.581 C4 N9 C8 106.680
C4 N9 H13 125.966 C5 C4 N9 104.904
C5 C6 H11 122.120 C5 N7 C8 104.430
C6 C5 N7 133.717 N7 C8 N9 113.406
N7 C8 H12 125.137 C8 N9 H13 127.355
N9 C8 H12 121.457
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/6-311+G(3df,2p) Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.945      
2 C 0.660      
3 N -0.951      
4 C 0.796      
5 C 0.524      
6 C 0.429      
7 N -0.953      
8 C 0.656      
9 N -0.784      
10 H 0.123      
11 H 0.128      
12 H 0.143      
13 H 0.174      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.214 2.906 0.000 3.653
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.972 6.193 0.000
y 6.193 -48.077 0.000
z 0.000 0.000 -52.038
Traceless
 xyz
x -0.914 6.193 0.000
y 6.193 3.428 0.000
z 0.000 0.000 -2.514
Polar
3z2-r2-5.028
x2-y2-2.895
xy6.193
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 17.533 1.431 0.000
y 1.431 13.844 0.000
z 0.000 0.000 7.194


<r2> (average value of r2) Å2
<r2> 255.794
(<r2>)1/2 15.994