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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/CEP-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/CEP-31G*
 hartrees
Energy at 0K-70.262739
Energy at 298.15K-70.270507
HF Energy-70.262739
Nuclear repulsion energy203.555461
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/CEP-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3643 3518 84.15      
2 A' 3242 3131 1.56      
3 A' 3192 3082 20.46      
4 A' 3170 3061 16.36      
5 A' 1642 1586 62.63      
6 A' 1618 1562 81.60      
7 A' 1519 1467 27.98      
8 A' 1476 1426 2.43      
9 A' 1422 1373 71.68      
10 A' 1400 1352 8.96      
11 A' 1357 1311 61.03      
12 A' 1306 1261 16.18      
13 A' 1295 1251 17.03      
14 A' 1270 1227 39.83      
15 A' 1190 1149 6.98      
16 A' 1118 1080 6.54      
17 A' 1069 1033 16.03      
18 A' 930 898 0.99      
19 A' 895 865 11.31      
20 A' 796 768 13.70      
21 A' 644 622 0.18      
22 A' 560 541 3.02      
23 A' 437 422 13.05      
24 A" 1000 966 0.00      
25 A" 946 913 21.09      
26 A" 885 855 13.93      
27 A" 816 788 8.71      
28 A" 655 632 4.12      
29 A" 616 595 26.32      
30 A" 528 509 94.95      
31 A" 419 404 5.40      
32 A" 247 239 0.67      
33 A" 231 223 5.52      

Unscaled Zero Point Vibrational Energy (zpe) 20765.8 cm-1
Scaled (by 0.9657) Zero Point Vibrational Energy (zpe) 20053.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/CEP-31G*
ABC
0.13477 0.05724 0.04017

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/CEP-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.839 -1.272 0.000
C2 -2.124 0.064 0.000
N3 -1.285 1.111 0.000
C4 0.000 0.715 0.000
C5 0.463 -0.634 0.000
C6 -0.548 -1.632 0.000
N7 1.858 -0.694 0.000
C8 2.205 0.579 0.000
N9 1.140 1.488 0.000
H10 -3.190 0.307 0.000
H11 -0.321 -2.704 0.000
H12 3.240 0.917 0.000
H13 1.183 2.505 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36642.44632.70712.38851.33973.74174.44714.06092.07822.08635.53044.8375
C21.36641.34152.22162.67942.31524.05364.35953.56131.09303.30335.43134.1108
N32.44631.34151.34472.46942.83993.62423.53012.45432.06743.93444.52872.8350
C42.70712.22161.34471.42552.40982.33152.20901.37763.21573.43363.24592.1463
C52.38852.67942.46941.42551.42091.39652.12252.22703.77182.21373.18083.2206
C61.33972.31522.83992.40981.42092.58273.53103.54743.27681.09574.56604.4850
N73.74174.05363.62422.33151.39652.58271.31922.29675.14602.96472.12263.2695
C84.44714.35953.53012.20902.12253.53101.31921.39985.40144.14221.08882.1804
N94.06093.56132.45431.37762.22703.54742.29671.39984.48804.43912.17551.0184
H102.07821.09302.06743.21573.77183.27685.14605.40144.48804.15866.45834.8945
H112.08633.30333.93443.43362.21371.09572.96474.14224.43914.15865.07895.4221
H125.53045.43134.52873.24593.18084.56602.12261.08882.17556.45835.07892.5979
H134.83754.11082.83502.14633.22064.48503.26952.18041.01844.89455.42212.5979

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.222 N1 C2 H10 114.902
N1 C6 C5 119.784 N1 C6 H11 117.540
C2 N1 C6 117.638 C2 N3 C4 111.591
N3 C2 H10 115.876 N3 C4 C5 126.074
N3 C4 N9 128.728 C4 C5 C6 115.691
C4 C5 N7 111.412 C4 N9 C8 105.374
C4 N9 H13 126.568 C5 C4 N9 105.197
C5 C6 H11 122.676 C5 N7 C8 102.774
C6 C5 N7 132.896 N7 C8 N9 115.242
N7 C8 H12 123.364 C8 N9 H13 128.058
N9 C8 H12 121.393
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/CEP-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N 0.289      
2 C -0.498      
3 N 0.380      
4 C -0.832      
5 C 0.162      
6 C -0.690      
7 N 0.317      
8 C -0.419      
9 N 0.096      
10 H 0.268      
11 H 0.272      
12 H 0.302      
13 H 0.354      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.301 2.984 0.000 3.768
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.070 6.352 0.000
y 6.352 -46.860 0.000
z 0.000 0.000 -51.958
Traceless
 xyz
x -0.661 6.352 0.000
y 6.352 4.154 0.000
z 0.000 0.000 -3.494
Polar
3z2-r2-6.988
x2-y2-3.210
xy6.352
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.362 1.498 0.000
y 1.498 11.945 0.000
z 0.000 0.000 5.345


<r2> (average value of r2) Å2
<r2> 200.479
(<r2>)1/2 14.159