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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HF/LANL2DZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HF/LANL2DZ
 hartrees
Energy at 0K-396.618113
Energy at 298.15K-396.628255
HF Energy-396.618113
Nuclear repulsion energy324.277455
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/LANL2DZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 4057 3651 59.75      
2 A 4023 3620 111.26      
3 A 3944 3549 20.96      
4 A 3809 3428 9.15      
5 A 3363 3027 28.80      
6 A 3298 2968 18.69      
7 A 3243 2918 59.18      
8 A 1867 1680 344.54      
9 A 1830 1647 49.52      
10 A 1657 1491 6.14      
11 A 1550 1395 8.03      
12 A 1536 1382 31.78      
13 A 1501 1351 4.46      
14 A 1480 1332 40.02      
15 A 1427 1284 38.72      
16 A 1351 1215 22.82      
17 A 1265 1139 27.42      
18 A 1241 1117 240.48      
19 A 1230 1106 64.80      
20 A 1159 1043 83.99      
21 A 1108 997 98.05      
22 A 1063 956 0.32      
23 A 885 797 38.64      
24 A 792 713 31.85      
25 A 663 597 244.71      
26 A 628 565 46.90      
27 A 607 546 375.81      
28 A 536 483 97.19      
29 A 511 460 193.67      
30 A 476 429 33.37      
31 A 317 285 13.15      
32 A 298 269 43.90      
33 A 290 261 0.34      
34 A 215 194 0.29      
35 A 160 144 7.05      
36 A 56 50 2.80      

Unscaled Zero Point Vibrational Energy (zpe) 26717.9 cm-1
Scaled (by 0.8999) Zero Point Vibrational Energy (zpe) 24043.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/LANL2DZ
ABC
0.11560 0.07702 0.05234

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/LANL2DZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.793 -0.538 0.017
O2 2.086 -0.366 -0.359
O3 0.420 -1.565 0.556
C4 -0.089 0.667 -0.308
C5 -1.526 0.454 0.190
O6 -2.150 -0.700 -0.380
N7 0.449 1.929 0.218
H8 2.688 -1.094 -0.189
H9 -0.118 0.737 -1.387
H10 -1.538 0.409 1.276
H11 -2.098 1.315 -0.107
H12 -1.827 -1.540 -0.059
H13 1.306 2.231 -0.207
H14 0.519 1.982 1.218

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.35721.21741.52892.52852.97442.49901.98502.10492.81413.43702.80662.82542.8055
O21.35722.24672.40793.74404.24922.87680.96012.67064.05084.51614.09672.71553.2332
O31.21742.24672.44682.82772.86873.50962.43233.05992.87233.88292.33023.97153.6095
C41.52892.40792.44681.53612.47461.46843.29021.08162.16332.12102.82092.09782.1045
C52.52853.74402.82771.53611.43042.46464.50492.13311.08721.07622.03193.36682.7522
O62.97444.24922.86872.47461.43043.74434.85742.68492.08472.03430.95554.53494.1076
N72.49902.87683.50961.46842.46463.74433.78372.07772.71662.63984.15791.00331.0046
H81.98500.96012.43233.29024.50494.85743.78373.55844.71875.35894.53873.60114.0185
H92.10492.67063.05991.08162.13312.68492.07773.55843.03642.42753.14192.37772.9573
H102.81414.05082.87232.16331.08722.08472.71664.71873.03641.74652.37973.68952.5910
H113.43704.51613.88292.12101.07622.03432.63985.35892.42751.74652.86863.52663.0088
H122.80664.09672.33022.82092.03190.95554.15794.53873.14192.37972.86864.90524.4207
H132.82542.71553.97152.09783.36684.53491.00333.60112.37773.68953.52664.90521.6469
H142.80553.23323.60952.10452.75224.10761.00464.01852.95732.59103.00884.42071.6469

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 116.826 C1 C4 C5 111.164
C1 C4 N7 112.951 C1 C4 H9 106.210
O2 C1 O3 121.441 O2 C1 C4 112.953
O3 C1 C4 125.606 C4 C5 O6 113.017
C4 C5 H10 109.929 C4 C5 H11 107.257
C4 N7 H13 114.841 C4 N7 H14 115.357
C5 C4 N7 110.210 C5 C4 H9 107.887
C5 O6 H12 115.334 O6 C5 H10 111.069
O6 C5 H11 107.661 N7 C4 H9 108.170
H10 C5 H11 107.667 H13 N7 H14 110.210
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/LANL2DZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.487      
2 O -0.609      
3 O -0.434      
4 C -0.037      
5 C -0.123      
6 O -0.648      
7 N -0.769      
8 H 0.441      
9 H 0.244      
10 H 0.151      
11 H 0.218      
12 H 0.422      
13 H 0.343      
14 H 0.314      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.045 1.169 1.005 3.413
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -42.424 -2.202 -2.848
y -2.202 -43.432 2.736
z -2.848 2.736 -42.181
Traceless
 xyz
x 0.383 -2.202 -2.848
y -2.202 -1.130 2.736
z -2.848 2.736 0.747
Polar
3z2-r21.494
x2-y21.008
xy-2.202
xz-2.848
yz2.736


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 6.208 0.277 -0.350
y 0.277 6.783 -0.354
z -0.350 -0.354 5.268


<r2> (average value of r2) Å2
<r2> 217.955
(<r2>)1/2 14.763