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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP2/LANL2DZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP2/LANL2DZ
 hartrees
Energy at 0K-397.335574
Energy at 298.15K-397.345226
HF Energy-396.604990
Nuclear repulsion energy316.564385
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/LANL2DZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3657 3522 8.21      
2 A 3651 3516 20.56      
3 A 3605 3472 50.13      
4 A 3525 3395 3.94      
5 A 3183 3065 18.43      
6 A 3115 3000 11.88      
7 A 3047 2935 47.45      
8 A 1716 1652 46.57      
9 A 1644 1583 163.14      
10 A 1532 1475 6.46      
11 A 1420 1368 8.18      
12 A 1404 1352 4.59      
13 A 1387 1336 9.97      
14 A 1370 1319 28.41      
15 A 1295 1247 17.86      
16 A 1249 1203 12.01      
17 A 1160 1118 24.13      
18 A 1131 1090 16.23      
19 A 1091 1051 216.48      
20 A 1025 987 79.10      
21 A 994 957 52.99      
22 A 963 927 71.17      
23 A 795 766 47.06      
24 A 712 686 190.13      
25 A 695 670 96.39      
26 A 602 580 156.12      
27 A 574 553 25.68      
28 A 484 467 177.71      
29 A 470 453 109.75      
30 A 434 418 30.91      
31 A 288 278 39.54      
32 A 278 268 23.80      
33 A 262 252 1.29      
34 A 195 188 0.12      
35 A 144 139 6.07      
36 A 44 42 1.72      

Unscaled Zero Point Vibrational Energy (zpe) 24570.9 cm-1
Scaled (by 0.9631) Zero Point Vibrational Energy (zpe) 23664.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/LANL2DZ
ABC
0.10876 0.07389 0.05058

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/LANL2DZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.799 -0.560 0.016
O2 2.117 -0.369 -0.380
O3 0.408 -1.606 0.576
C4 -0.080 0.680 -0.309
C5 -1.539 0.469 0.195
O6 -2.194 -0.691 -0.398
N7 0.467 1.962 0.230
H8 2.707 -1.137 -0.193
H9 -0.116 0.762 -1.409
H10 -1.542 0.416 1.303
H11 -2.116 1.354 -0.101
H12 -1.838 -1.540 -0.063
H13 1.357 2.239 -0.193
H14 0.561 1.971 1.251

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.39001.24911.55482.56073.02432.55272.00442.14812.84413.48892.81372.86202.8270
O21.39002.31662.43673.79544.32382.92080.98582.70684.10364.57914.13702.72333.2497
O31.24912.31662.49972.87062.92513.58472.46943.13392.90153.94802.33554.03433.6436
C41.55482.43672.49971.55792.52121.49393.32951.10342.19172.15412.84232.12352.1245
C52.56073.79542.87061.55791.45782.50064.55632.16411.10911.09692.04733.41642.7904
O63.02434.32382.92512.52121.45783.80924.92592.72992.13152.06730.98014.60844.1714
N72.55272.92083.58471.49392.50063.80923.84692.11302.75182.67384.20211.02411.0256
H82.00440.98582.46943.32954.55634.92593.84693.61314.76465.42884.56453.63574.0433
H92.14812.70683.13391.10342.16412.72992.11303.61313.08302.46163.17422.41452.9996
H102.84414.10362.90152.19171.10912.13152.75184.76463.08301.78312.40433.73662.6162
H113.48894.57913.94802.15411.09692.06732.67385.42882.46161.78312.90733.58533.0627
H122.81374.13702.33552.84232.04730.98014.20214.56453.17422.40432.90734.95024.4512
H132.86202.72334.03432.12353.41644.60841.02413.63572.41453.73663.58534.95021.6704
H142.82703.24973.64362.12452.79044.17141.02564.04332.99962.61623.06274.45121.6704

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 113.975 C1 C4 C5 110.709
C1 C4 N7 113.700 C1 C4 H9 106.593
O2 C1 O3 122.663 O2 C1 C4 111.553
O3 C1 C4 125.778 C4 C5 O6 113.406
C4 C5 H10 109.375 C4 C5 H11 107.190
C4 N7 H13 113.678 C4 N7 H14 113.662
C5 C4 N7 110.030 C5 C4 H9 107.593
C5 O6 H12 112.767 O6 C5 H10 111.553
O6 C5 H11 107.193 N7 C4 H9 107.942
H10 C5 H11 107.861 H13 N7 H14 109.161
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability