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All results from a given calculation for C5H4N4 (purine)

using model chemistry: MP2/SDD

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at MP2/SDD
 hartrees
Energy at 0K-410.156975
Energy at 298.15K-410.164620
HF Energy-409.296107
Nuclear repulsion energy401.656464
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/SDD
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3662 3535 115.60      
2 A' 3292 3178 1.30      
3 A' 3248 3135 11.52      
4 A' 3221 3109 7.54      
5 A' 1579 1525 50.44      
6 A' 1541 1487 18.62      
7 A' 1441 1391 52.96      
8 A' 1424 1375 1.30      
9 A' 1397 1348 10.98      
10 A' 1383 1335 48.00      
11 A' 1318 1273 3.97      
12 A' 1278 1234 70.14      
13 A' 1237 1194 8.56      
14 A' 1210 1168 75.72      
15 A' 1144 1105 1.95      
16 A' 1089 1051 12.79      
17 A' 1043 1007 4.10      
18 A' 919 887 0.61      
19 A' 879 848 14.32      
20 A' 756 730 7.13      
21 A' 643 621 0.49      
22 A' 554 535 2.35      
23 A' 424 409 16.88      
24 A" 911 880 0.44      
25 A" 862 832 32.22      
26 A" 811 783 9.79      
27 A" 772 745 11.08      
28 A" 656 633 70.78      
29 A" 635 613 107.78      
30 A" 600 580 0.35      
31 A" 410 396 0.69      
32 A" 237 229 2.34      
33 A" 213 206 4.60      

Unscaled Zero Point Vibrational Energy (zpe) 20396.5 cm-1
Scaled (by 0.9653) Zero Point Vibrational Energy (zpe) 19688.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/SDD
ABC
0.13089 0.05544 0.03894

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/SDD

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.853 -1.303 0.000
C2 -2.183 0.052 0.000
N3 -1.318 1.110 0.000
C4 0.000 0.723 0.000
C5 0.469 -0.640 0.000
C6 -0.534 -1.657 0.000
N7 1.889 -0.690 0.000
C8 2.248 0.614 0.000
N9 1.151 1.512 0.000
H10 -3.246 0.282 0.000
H11 -0.294 -2.721 0.000
H12 3.275 0.957 0.000
H13 1.183 2.528 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.39472.47122.74572.41421.36553.79174.52664.11722.11002.10725.60394.8879
C21.39471.36612.28352.74022.37494.13874.46583.63971.08753.35525.53234.1779
N32.47121.36611.37312.50052.87583.67713.59952.50172.09803.96514.59542.8747
C42.74572.28351.37311.44192.44002.35912.25021.39573.27553.45713.28352.1577
C52.41422.74022.50051.44191.42841.42122.17692.25833.82702.21643.22923.2478
C61.36552.37492.87582.44001.42842.60923.59163.59013.33371.09044.62024.5240
N73.79174.13873.67712.35911.42122.60921.35282.32255.22572.98212.15263.2947
C84.52664.46583.59952.25022.17693.59161.35281.41715.50324.19381.08322.1901
N94.11723.63972.50171.39572.25833.59012.32251.41714.56584.47352.19531.0163
H102.11001.08752.09803.27553.82703.33375.22575.50324.56584.21066.55564.9652
H112.10723.35523.96513.45712.21641.09042.98214.19384.47354.21065.12545.4531
H125.60395.53234.59543.28353.22924.62022.15261.08322.19536.55565.12542.6168
H134.88794.17792.87472.15773.24784.52403.29472.19011.01634.96525.45312.6168

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.037 N1 C2 H10 115.883
N1 C6 C5 119.545 N1 C6 H11 117.753
C2 N1 C6 118.725 C2 N3 C4 112.950
N3 C2 H10 117.080 N3 C4 C5 125.298
N3 C4 N9 129.243 C4 C5 C6 116.444
C4 C5 N7 110.967 C4 N9 C8 106.258
C4 N9 H13 126.185 C5 C4 N9 105.458
C5 C6 H11 122.701 C5 N7 C8 103.370
C6 C5 N7 132.588 N7 C8 N9 113.947
N7 C8 H12 123.804 C8 N9 H13 127.558
N9 C8 H12 122.249
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability