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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HF/aug-cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HF/aug-cc-pVDZ
 hartrees
Energy at 0K-396.795628
Energy at 298.15K-396.805981
HF Energy-396.795628
Nuclear repulsion energy327.463864
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/aug-cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 4154 3783 78.56      
2 A 4106 3739 127.12      
3 A 3822 3481 10.39      
4 A 3730 3396 3.83      
5 A 3274 2981 28.03      
6 A 3225 2936 19.72      
7 A 3174 2891 46.32      
8 A 1965 1789 368.45      
9 A 1784 1624 38.19      
10 A 1614 1470 4.81      
11 A 1553 1415 32.35      
12 A 1536 1399 43.44      
13 A 1500 1366 46.30      
14 A 1487 1354 3.87      
15 A 1425 1297 10.81      
16 A 1346 1226 53.52      
17 A 1289 1174 155.77      
18 A 1267 1154 101.82      
19 A 1218 1110 18.52      
20 A 1191 1084 116.31      
21 A 1116 1016 33.74      
22 A 1068 973 0.87      
23 A 933 850 155.21      
24 A 883 804 47.61      
25 A 816 743 23.72      
26 A 657 598 56.87      
27 A 623 568 74.23      
28 A 554 504 79.85      
29 A 500 455 133.18      
30 A 487 444 5.59      
31 A 317 289 10.45      
32 A 307 279 23.48      
33 A 290 264 15.40      
34 A 219 200 0.97      
35 A 164 150 4.50      
36 A 45 41 1.74      

Unscaled Zero Point Vibrational Energy (zpe) 26819.3 cm-1
Scaled (by 0.9106) Zero Point Vibrational Energy (zpe) 24421.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/aug-cc-pVDZ
ABC
0.11869 0.07751 0.05322

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/aug-cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.829 -0.498 0.036
O2 2.058 -0.289 -0.428
O3 0.536 -1.498 0.615
C4 -0.119 0.651 -0.294
C5 -1.538 0.365 0.197
O6 -2.110 -0.755 -0.414
N7 0.336 1.927 0.228
H8 2.596 -1.041 -0.215
H9 -0.145 0.720 -1.382
H10 -1.539 0.267 1.286
H11 -2.154 1.222 -0.061
H12 -1.675 -1.532 -0.101
H13 1.215 2.198 -0.166
H14 0.443 1.906 1.226

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.33021.19241.52572.52482.98462.48201.86552.10772.78503.44482.71262.73042.7094
O21.33022.20562.37573.70874.19442.88310.94812.60474.02364.49043.94802.63943.1881
O31.19242.20562.42392.81962.93513.45272.26723.06152.80613.88532.32453.83803.4592
C41.52572.37572.42391.52872.44051.45213.20011.09042.15912.12642.68782.04662.0496
C52.52483.70872.81961.52871.39812.43984.38622.13551.09371.08651.92543.32742.7123
O62.98464.19442.93512.44051.39813.68644.71912.64102.06432.00920.94414.45404.0355
N72.48202.88313.45271.45212.43983.68643.75692.06962.71822.60364.01471.00121.0034
H81.86550.94812.26723.20014.38624.71913.75693.46064.58955.26384.30053.52103.9236
H92.10772.60473.06151.09042.13552.64102.06963.46063.04442.45643.00892.34792.9247
H102.78504.02362.80612.15911.09372.06432.71824.58953.04441.76212.27623.66352.5720
H113.44484.49043.88532.12641.08652.00922.60365.26382.45641.76212.79633.50892.9775
H122.71263.94802.32452.68781.92540.94414.01474.30053.00892.27622.79634.71894.2501
H132.73042.63943.83802.04663.32744.45401.00123.52102.34793.66353.50894.71891.6187
H142.70943.18813.45922.04962.71234.03551.00343.92362.92472.57202.97754.25011.6187

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.776 C1 C4 C5 111.503
C1 C4 N7 112.897 C1 C4 H9 106.158
O2 C1 O3 121.834 O2 C1 C4 112.398
O3 C1 C4 125.748 C4 C5 O6 112.911
C4 C5 H10 109.718 C4 C5 H11 107.591
C4 N7 H13 111.753 C4 N7 H14 111.866
C5 C4 N7 109.843 C5 C4 H9 108.075
C5 O6 H12 109.032 O6 C5 H10 111.290
O6 C5 H11 107.263 N7 C4 H9 108.134
H10 C5 H11 107.845 H13 N7 H14 107.705
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/aug-cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 1.153      
2 O -0.664      
3 O -0.736      
4 C -0.189      
5 C 1.447      
6 O -0.676      
7 N -0.319      
8 H 0.169      
9 H -0.068      
10 H -0.143      
11 H -0.088      
12 H 0.133      
13 H -0.006      
14 H -0.012      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.827 0.789 0.510 2.979
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.197 -1.530 -1.882
y -1.530 -44.230 2.113
z -1.882 2.113 -41.529
Traceless
 xyz
x 1.683 -1.530 -1.882
y -1.530 -2.867 2.113
z -1.882 2.113 1.184
Polar
3z2-r22.369
x2-y23.033
xy-1.530
xz-1.882
yz2.113


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.234 0.043 -0.215
y 0.043 8.362 -0.208
z -0.215 -0.208 6.804


<r2> (average value of r2) Å2
<r2> 214.119
(<r2>)1/2 14.633