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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: QCISD/aug-cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at QCISD/aug-cc-pVDZ
 hartrees
Energy at 0K-398.035014
Energy at 298.15K-398.044977
HF Energy-396.790045
Nuclear repulsion energy323.763085
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at QCISD/aug-cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3819 3699 45.02      
2 A 3772 3654 73.79      
3 A 3584 3471 4.32      
4 A 3489 3380 1.68      
5 A 3135 3037 17.82      
6 A 3086 2989 11.45      
7 A 3031 2936 36.99      
8 A 1791 1735 253.34      
9 A 1659 1607 29.40      
10 A 1495 1448 4.56      
11 A 1434 1389 28.14      
12 A 1419 1375 34.44      
13 A 1396 1352 32.61      
14 A 1378 1335 4.67      
15 A 1321 1280 3.65      
16 A 1248 1209 25.61      
17 A 1186 1149 33.91      
18 A 1168 1132 202.16      
19 A 1142 1106 15.54      
20 A 1094 1060 82.67      
21 A 1038 1005 43.23      
22 A 997 965 2.57      
23 A 886 859 143.81      
24 A 816 790 14.68      
25 A 750 727 16.67      
26 A 615 596 72.98      
27 A 590 571 34.78      
28 A 512 496 92.56      
29 A 484 469 90.94      
30 A 456 442 6.31      
31 A 290 281 16.33      
32 A 282 273 22.95      
33 A 270 261 5.98      
34 A 204 198 0.86      
35 A 155 150 4.18      
36 A 41 40 1.47      

Unscaled Zero Point Vibrational Energy (zpe) 25015.3 cm-1
Scaled (by 0.9687) Zero Point Vibrational Energy (zpe) 24232.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at QCISD/aug-cc-pVDZ
ABC
0.11483 0.07653 0.05280

See section I.F.4 to change rotational constant units
Geometric Data calculated at QCISD/aug-cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.802 -0.534 0.018
O2 2.076 -0.330 -0.393
O3 0.440 -1.552 0.581
C4 -0.095 0.671 -0.309
C5 -1.527 0.424 0.192
O6 -2.128 -0.717 -0.401
N7 0.407 1.938 0.233
H8 2.587 -1.121 -0.165
H9 -0.127 0.753 -1.410
H10 -1.520 0.356 1.299
H11 -2.134 1.298 -0.088
H12 -1.680 -1.497 -0.050
H13 1.311 2.182 -0.168
H14 0.524 1.886 1.245

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.35471.21791.53692.52442.96492.51241.88852.13562.79633.46262.66312.76932.7271
O21.35472.26222.39223.72804.22182.88480.96902.65814.03264.52503.94852.63573.1625
O31.21792.26222.45302.81512.87303.50732.31333.09832.82743.89862.21293.90623.5022
C41.53692.39222.45301.53782.46291.46713.22891.10482.17142.14532.69782.06842.0678
C52.52443.72802.81511.53781.41862.45734.40972.15341.10891.10101.94163.35792.7307
O62.96494.22182.87302.46291.41863.72504.73802.67992.09982.03930.96514.50304.0639
N72.51242.88483.50731.46712.45733.72503.77782.09532.71162.64044.02931.01811.0203
H81.88850.96902.31333.22894.40974.73803.77783.52604.60325.30614.28543.54143.9100
H92.13562.65813.09831.10482.15342.67992.09533.52603.07192.46453.05352.37712.9596
H102.79634.03262.82742.17141.10892.09982.71164.60323.07191.78632.29723.67392.5537
H113.46264.52503.89862.14531.10102.03932.64045.30612.46451.78632.83203.55723.0317
H122.66313.94852.21292.69781.94160.96514.02934.28543.05352.29722.83204.74244.2402
H132.76932.63573.90622.06843.35794.50301.01813.54142.37713.67393.55724.74241.6444
H142.72713.16253.50222.06782.73074.06391.02033.91002.95962.55373.03174.24021.6444

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.569 C1 C4 C5 110.374
C1 C4 N7 113.499 C1 C4 H9 106.740
O2 C1 O3 123.041 O2 C1 C4 111.492
O3 C1 C4 125.466 C4 C5 O6 112.772
C4 C5 H10 109.177 C4 C5 H11 107.632
C4 N7 H13 111.393 C4 N7 H14 111.197
C5 C4 N7 109.703 C5 C4 H9 108.034
C5 O6 H12 107.560 O6 C5 H10 111.772
O6 C5 H11 107.406 N7 C4 H9 108.291
H10 C5 H11 107.867 H13 N7 H14 107.554
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability