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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: LSDA/aug-cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at LSDA/aug-cc-pVDZ
 hartrees
Energy at 0K-396.998943
Energy at 298.15K-397.008922
HF Energy-396.998943
Nuclear repulsion energy328.674434
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at LSDA/aug-cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3598 3557 64.08      
2 A 3515 3475 11.63      
3 A 3445 3406 259.83      
4 A 3422 3384 3.38      
5 A 3036 3002 15.15      
6 A 2952 2919 12.97      
7 A 2861 2829 70.22      
8 A 1751 1731 231.37      
9 A 1567 1549 46.34      
10 A 1417 1401 30.27      
11 A 1414 1398 20.39      
12 A 1354 1339 141.57      
13 A 1312 1297 5.86      
14 A 1297 1283 2.44      
15 A 1250 1236 5.15      
16 A 1190 1177 5.90      
17 A 1178 1165 3.07      
18 A 1153 1140 95.56      
19 A 1137 1124 176.63      
20 A 1103 1090 39.76      
21 A 1004 992 32.58      
22 A 962 951 1.95      
23 A 812 803 38.82      
24 A 770 762 151.99      
25 A 734 726 45.62      
26 A 680 673 88.02      
27 A 644 637 97.33      
28 A 565 559 4.95      
29 A 533 527 53.99      
30 A 415 410 7.12      
31 A 308 305 3.30      
32 A 289 286 3.95      
33 A 256 253 3.45      
34 A 195 193 42.49      
35 A 160 158 0.38      
36 A 37 36 0.19      

Unscaled Zero Point Vibrational Energy (zpe) 24157.7 cm-1
Scaled (by 0.9887) Zero Point Vibrational Energy (zpe) 23884.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at LSDA/aug-cc-pVDZ
ABC
0.12009 0.08332 0.05172

See section I.F.4 to change rotational constant units
Geometric Data calculated at LSDA/aug-cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.740 -0.545 0.005
O2 2.027 -0.402 -0.340
O3 0.301 -1.545 0.535
C4 -0.068 0.688 -0.321
C5 -1.479 0.478 0.178
O6 -2.052 -0.672 -0.376
N7 0.482 1.909 0.224
H8 2.488 -1.232 -0.098
H9 -0.097 0.771 -1.427
H10 -1.459 0.428 1.291
H11 -2.084 1.355 -0.116
H12 -1.568 -1.434 -0.004
H13 1.397 2.126 -0.180
H14 0.587 1.851 1.242

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34091.21361.50982.44942.82042.47801.88102.11732.72673.40542.47242.75742.7012
O21.34092.24802.36213.65234.08852.83750.97932.65923.93764.47663.75522.61083.1075
O31.21362.24802.41952.71752.66983.47292.29853.06112.74933.81001.94793.89733.4803
C41.50982.36212.41951.51162.40591.44593.20431.10942.14482.13322.61732.05762.0551
C52.44943.65232.71751.51161.39862.42824.32852.13831.11361.10521.92183.33422.6990
O62.82044.08852.66982.40591.39863.66614.58302.64702.08272.04310.97624.44533.9929
N72.47802.83753.47291.44592.42823.66613.74112.08712.66452.64663.92761.02351.0252
H81.88100.97932.29853.20434.32854.58303.74113.53004.50125.25284.06193.53173.8618
H92.11732.65923.06111.10942.13832.64702.08713.53003.05892.45083.00742.37162.9592
H102.72673.93762.74932.14481.11362.08272.66454.50123.05891.79642.27013.63362.4925
H113.40544.47663.81002.13321.10522.04312.64665.25282.45081.79642.83773.56573.0365
H122.47243.75521.94792.61731.92180.97623.92764.06193.00742.27012.83774.63584.1209
H132.75742.61083.89732.05763.33424.44531.02353.53172.37163.63363.56574.63581.6595
H142.70123.10753.48032.05512.69903.99291.02523.86182.95922.49253.03654.12091.6595

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.311 C1 C4 C5 108.324
C1 C4 N7 113.923 C1 C4 H9 106.875
O2 C1 O3 123.219 O2 C1 C4 111.773
O3 C1 C4 124.996 C4 C5 O6 111.462
C4 C5 H10 108.623 C4 C5 H11 108.210
C4 N7 H13 111.727 C4 N7 H14 111.403
C5 C4 N7 110.360 C5 C4 H9 108.358
C5 O6 H12 106.689 O6 C5 H10 111.498
O6 C5 H11 108.811 N7 C4 H9 108.815
H10 C5 H11 108.127 H13 N7 H14 108.190
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at LSDA/aug-cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.620      
2 O -0.373      
3 O -0.475      
4 C 0.082      
5 C 0.997      
6 O -0.385      
7 N 0.039      
8 H 0.176      
9 H -0.272      
10 H -0.304      
11 H -0.216      
12 H 0.137      
13 H -0.024      
14 H -0.003      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.744 0.615 0.604 3.841
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -43.219 -3.238 -0.405
y -3.238 -45.807 0.755
z -0.405 0.755 -40.270
Traceless
 xyz
x -0.180 -3.238 -0.405
y -3.238 -4.063 0.755
z -0.405 0.755 4.243
Polar
3z2-r28.486
x2-y22.588
xy-3.238
xz-0.405
yz0.755


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 10.439 0.002 0.128
y 0.002 10.050 0.050
z 0.128 0.050 7.587


<r2> (average value of r2) Å2
<r2> 212.159
(<r2>)1/2 14.566