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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B1B95/aug-cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B1B95/aug-cc-pVDZ
 hartrees
Energy at 0K-398.875122
Energy at 298.15K-398.885020
HF Energy-398.875122
Nuclear repulsion energy326.919032
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B1B95/aug-cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3822 3661 67.35      
2 A 3791 3632 84.66      
3 A 3630 3478 7.75      
4 A 3536 3387 2.20      
5 A 3152 3019 16.66      
6 A 3093 2962 12.37      
7 A 3028 2901 46.06      
8 A 1820 1743 283.59      
9 A 1644 1575 33.42      
10 A 1480 1417 5.57      
11 A 1425 1365 29.47      
12 A 1402 1343 53.91      
13 A 1383 1325 34.05      
14 A 1364 1307 4.92      
15 A 1307 1252 7.23      
16 A 1238 1186 23.18      
17 A 1189 1139 21.91      
18 A 1172 1123 193.70      
19 A 1144 1096 10.51      
20 A 1117 1070 118.30      
21 A 1036 993 30.34      
22 A 990 948 3.42      
23 A 853 817 122.28      
24 A 813 779 52.23      
25 A 751 719 18.70      
26 A 623 597 87.74      
27 A 587 563 15.40      
28 A 520 498 146.70      
29 A 497 476 39.49      
30 A 449 430 9.44      
31 A 285 273 6.99      
32 A 262 251 11.88      
33 A 259 248 23.98      
34 A 196 187 4.72      
35 A 157 150 4.01      
36 A 35 33 1.05      

Unscaled Zero Point Vibrational Energy (zpe) 25024.5 cm-1
Scaled (by 0.9579) Zero Point Vibrational Energy (zpe) 23971.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B1B95/aug-cc-pVDZ
ABC
0.11843 0.07868 0.05291

See section I.F.4 to change rotational constant units
Geometric Data calculated at B1B95/aug-cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.785 -0.532 0.010
O2 2.054 -0.337 -0.381
O3 0.420 -1.540 0.570
C4 -0.093 0.669 -0.307
C5 -1.511 0.426 0.194
O6 -2.105 -0.702 -0.395
N7 0.418 1.919 0.229
H8 2.556 -1.128 -0.147
H9 -0.128 0.754 -1.401
H10 -1.497 0.352 1.293
H11 -2.113 1.297 -0.077
H12 -1.650 -1.477 -0.053
H13 1.316 2.153 -0.175
H14 0.537 1.865 1.234

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34251.20851.52142.49422.92262.48821.87552.11602.76333.42842.61242.74392.7036
O21.34252.24042.37223.69064.17502.85260.96582.64453.98614.48683.88982.60533.1238
O31.20852.24042.43132.78072.83003.47512.29003.07292.78873.85822.16293.87203.4710
C41.52142.37222.43131.52342.43621.45243.20521.09752.15282.12842.66402.05052.0502
C52.49423.69062.78071.52341.40392.43914.36692.13591.10161.09371.92383.33322.7107
O62.92264.17502.83002.43621.40393.69054.68692.65262.08022.02410.96184.46104.0278
N72.48822.85263.47511.45242.43913.69053.74152.07662.69382.62423.98591.01221.0139
H81.87550.96582.29003.20524.36694.68693.74153.50994.54915.26234.22173.50813.8660
H92.11602.64453.07291.09752.13592.65262.07663.50993.04852.44723.01822.35552.9365
H102.76333.98612.78872.15281.10162.08022.69384.54913.04851.77502.27553.64902.5366
H113.42844.48683.85822.12841.09372.02412.62425.26232.44721.77502.81283.53593.0112
H122.61243.88982.16292.66401.92380.96183.98594.22173.01822.27552.81284.68954.1966
H132.74392.60533.87202.05053.33324.46101.01223.50812.35553.64903.53594.68951.6354
H142.70363.12383.47102.05022.71074.02781.01393.86602.93652.53663.01124.19661.6354

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.554 C1 C4 C5 110.000
C1 C4 N7 113.567 C1 C4 H9 106.678
O2 C1 O3 122.769 O2 C1 C4 111.699
O3 C1 C4 125.512 C4 C5 O6 112.594
C4 C5 H10 109.134 C4 C5 H11 107.698
C4 N7 H13 111.346 C4 N7 H14 111.219
C5 C4 N7 110.076 C5 C4 H9 108.065
C5 O6 H12 107.348 O6 C5 H10 111.682
O6 C5 H11 107.627 N7 C4 H9 108.245
H10 C5 H11 107.911 H13 N7 H14 107.643
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B1B95/aug-cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.784      
2 O -0.473      
3 O -0.550      
4 C 0.189      
5 C 1.319      
6 O -0.472      
7 N -0.086      
8 H 0.155      
9 H -0.335      
10 H -0.326      
11 H -0.233      
12 H 0.111      
13 H -0.035      
14 H -0.047      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.979 0.648 0.535 3.096
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.424 -2.014 -1.422
y -2.014 -44.202 1.790
z -1.422 1.790 -41.155
Traceless
 xyz
x 1.254 -2.014 -1.422
y -2.014 -2.913 1.790
z -1.422 1.790 1.658
Polar
3z2-r23.316
x2-y22.778
xy-2.014
xz-1.422
yz1.790


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 9.436 -0.009 -0.249
y -0.009 9.417 -0.169
z -0.249 -0.169 7.367


<r2> (average value of r2) Å2
<r2> 213.650
(<r2>)1/2 14.617