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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/aug-cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/aug-cc-pVTZ
 hartrees
Energy at 0K-412.095350
Energy at 298.15K-412.103263
HF Energy-412.095350
Nuclear repulsion energy413.406875
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/aug-cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3642 3524 86.49      
2 A' 3234 3129 0.32      
3 A' 3175 3072 10.94      
4 A' 3162 3060 12.28      
5 A' 1642 1589 68.35      
6 A' 1609 1557 81.02      
7 A' 1517 1468 26.24      
8 A' 1482 1434 1.76      
9 A' 1425 1379 50.97      
10 A' 1411 1365 26.26      
11 A' 1363 1319 47.61      
12 A' 1310 1267 36.40      
13 A' 1286 1244 0.39      
14 A' 1267 1226 48.76      
15 A' 1204 1165 5.76      
16 A' 1131 1094 7.15      
17 A' 1075 1040 18.07      
18 A' 946 916 1.09      
19 A' 910 881 12.11      
20 A' 807 781 13.39      
21 A' 660 639 0.30      
22 A' 570 552 3.02      
23 A' 446 432 12.19      
24 A" 1002 970 0.30      
25 A" 950 919 9.61      
26 A" 890 861 5.97      
27 A" 823 796 9.94      
28 A" 668 646 7.82      
29 A" 625 605 20.39      
30 A" 538 521 90.09      
31 A" 422 409 3.12      
32 A" 248 240 1.02      
33 A" 231 224 4.05      

Unscaled Zero Point Vibrational Energy (zpe) 20837.4 cm-1
Scaled (by 0.9675) Zero Point Vibrational Energy (zpe) 20160.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/aug-cc-pVTZ
ABC
0.13891 0.05872 0.04127

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/aug-cc-pVTZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.825 -1.252 0.000
C2 -2.123 0.061 0.000
N3 -1.272 1.084 0.000
C4 0.000 0.696 0.000
C5 0.449 -0.631 0.000
C6 -0.542 -1.608 0.000
N7 1.834 -0.668 0.000
C8 2.204 0.583 0.000
N9 1.140 1.459 0.000
H10 -3.178 0.306 0.000
H11 -0.307 -2.666 0.000
H12 3.225 0.931 0.000
H13 1.182 2.464 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34632.40062.66892.35631.33093.70524.42704.01752.06342.07385.50144.7799
C21.34631.33072.21542.66262.29824.02344.35823.54961.08313.27565.41814.0858
N32.40061.33071.32962.42922.78873.56603.51192.44072.05873.87174.49962.8149
C42.66892.21541.32961.40082.36612.28572.20721.37223.20143.37533.23392.1268
C52.35632.66262.42921.40081.39071.38622.13462.20203.74522.17013.18593.1809
C61.33092.29822.78872.36611.39072.55523.51273.49783.25691.08394.54254.4213
N73.70524.02343.56602.28571.38622.55521.30442.23775.10562.92842.11913.1992
C84.42704.35823.51192.20722.13463.51271.30441.37875.38904.10601.07862.1411
N94.01753.54962.44071.37222.20203.49782.23771.37874.46914.37142.15121.0055
H102.06341.08312.05873.20143.74523.25695.10565.38904.46914.13156.43334.8644
H112.07383.27563.87173.37532.17011.08392.92844.10604.37144.13155.04085.3412
H125.50145.41814.49963.23393.18594.54252.11911.07862.15126.43335.04082.5548
H134.77994.08582.81492.12683.18094.42133.19922.14111.00554.86445.34122.5548

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.466 N1 C2 H10 115.853
N1 C6 C5 119.928 N1 C6 H11 118.004
C2 N1 C6 118.274 C2 N3 C4 112.768
N3 C2 H10 116.680 N3 C4 C5 125.655
N3 C4 N9 129.207 C4 C5 C6 115.909
C4 C5 N7 110.193 C4 N9 C8 106.711
C4 N9 H13 126.194 C5 C4 N9 105.138
C5 C6 H11 122.068 C5 N7 C8 104.962
C6 C5 N7 133.899 N7 C8 N9 112.996
N7 C8 H12 125.289 C8 N9 H13 127.094
N9 C8 H12 121.715
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability