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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B97D3/aug-cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B97D3/aug-cc-pVTZ
 hartrees
Energy at 0K-411.825229
Energy at 298.15K-411.832945
HF Energy-411.825229
Nuclear repulsion energy411.230346
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/aug-cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3587 3532 63.20      
2 A' 3185 3136 0.75      
3 A' 3120 3072 14.91      
4 A' 3106 3058 17.92      
5 A' 1594 1570 61.84      
6 A' 1563 1539 66.97      
7 A' 1464 1441 21.20      
8 A' 1440 1418 1.04      
9 A' 1387 1366 38.91      
10 A' 1368 1347 19.65      
11 A' 1329 1308 39.22      
12 A' 1275 1256 47.87      
13 A' 1254 1235 7.80      
14 A' 1242 1223 43.47      
15 A' 1170 1152 5.32      
16 A' 1102 1085 6.12      
17 A' 1043 1027 18.75      
18 A' 927 913 0.89      
19 A' 888 875 11.76      
20 A' 791 779 11.05      
21 A' 649 639 0.32      
22 A' 560 552 2.86      
23 A' 435 428 11.60      
24 A" 960 945 0.27      
25 A" 910 896 10.40      
26 A" 840 828 6.22      
27 A" 793 781 10.50      
28 A" 649 640 5.65      
29 A" 608 598 21.04      
30 A" 515 507 82.85      
31 A" 400 394 2.27      
32 A" 234 231 0.89      
33 A" 220 216 3.98      

Unscaled Zero Point Vibrational Energy (zpe) 20304.0 cm-1
Scaled (by 0.9847) Zero Point Vibrational Energy (zpe) 19993.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/aug-cc-pVTZ
ABC
0.13736 0.05813 0.04084

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/aug-cc-pVTZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.840 -1.244 0.000
C2 -2.127 0.072 0.000
N3 -1.266 1.104 0.000
C4 0.000 0.703 0.000
C5 0.449 -0.641 0.000
C6 -0.552 -1.612 0.000
N7 1.839 -0.690 0.000
C8 2.212 0.569 0.000
N9 1.151 1.461 0.000
H10 -3.183 0.331 0.000
H11 -0.327 -2.677 0.000
H12 3.237 0.916 0.000
H13 1.197 2.468 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34672.41682.67882.36751.34013.72064.43904.03302.06942.08415.51754.7965
C21.34671.34342.21832.67302.30564.03814.36693.56021.08753.28555.42974.0977
N32.41681.34341.32842.44742.80803.58613.51922.44402.06653.89554.50732.8163
C42.67882.21831.32841.41722.37922.30662.21581.37853.20463.39523.24392.1332
C52.36752.67302.44741.41721.39411.39042.13792.21643.76022.17823.19323.1983
C61.34012.30562.80802.37921.39412.56223.52013.51293.27061.08854.55444.4390
N73.72064.03813.58612.30661.39042.56221.31262.25795.12452.93912.12913.2225
C84.43904.36693.51922.21582.13793.52011.31261.38585.40004.12041.08242.1534
N94.03303.56022.44401.37852.21643.51292.25791.38584.47924.39372.15561.0084
H102.06941.08752.06653.20463.76023.27065.12455.40004.47924.14766.44654.8739
H112.08413.28553.89553.39522.17821.08852.93914.12044.39374.14765.06055.3659
H125.51755.42974.50733.24393.19324.55442.12911.08242.15566.44655.06052.5630
H134.79654.09772.81632.13323.19834.43903.22252.15341.00844.87395.36592.5630

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.896 N1 C2 H10 116.053
N1 C6 C5 119.962 N1 C6 H11 117.850
C2 N1 C6 118.214 C2 N3 C4 112.249
N3 C2 H10 116.051 N3 C4 C5 126.055
N3 C4 N9 129.063 C4 C5 C6 115.624
C4 C5 N7 110.477 C4 N9 C8 106.561
C4 N9 H13 125.980 C5 C4 N9 104.882
C5 C6 H11 122.188 C5 N7 C8 104.512
C6 C5 N7 133.899 N7 C8 N9 113.568
N7 C8 H12 125.222 C8 N9 H13 127.459
N9 C8 H12 121.210
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/aug-cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.412      
2 C -0.358      
3 N -0.580      
4 C 0.569      
5 C 1.084      
6 C -0.403      
7 N -0.715      
8 C -0.616      
9 N 0.193      
10 H 0.392      
11 H 0.454      
12 H 0.423      
13 H -0.032      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.209 2.895 0.000 3.641
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.036 6.171 0.000
y 6.171 -48.109 0.000
z 0.000 0.000 -51.913
Traceless
 xyz
x -1.025 6.171 0.000
y 6.171 3.366 0.000
z 0.000 0.000 -2.341
Polar
3z2-r2-4.682
x2-y2-2.927
xy6.171
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 17.606 1.433 0.000
y 1.433 13.926 0.000
z 0.000 0.000 7.212


<r2> (average value of r2) Å2
<r2> 255.831
(<r2>)1/2 15.995