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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: BLYP/6-31G(2df,p)

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at BLYP/6-31G(2df,p)
 hartrees
Energy at 0K-398.872792
Energy at 298.15K-398.882560
HF Energy-398.872792
Nuclear repulsion energy322.257149
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/6-31G(2df,p)
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3582 3563 0.87      
2 A 3577 3557 118.94      
3 A 3451 3432 0.64      
4 A 3374 3356 0.30      
5 A 3018 3002 25.00      
6 A 2947 2931 15.39      
7 A 2863 2847 66.49      
8 A 1716 1707 199.41      
9 A 1624 1615 22.14      
10 A 1466 1458 0.80      
11 A 1418 1410 66.87      
12 A 1348 1341 0.96      
13 A 1343 1336 8.18      
14 A 1310 1303 31.07      
15 A 1281 1273 10.32      
16 A 1198 1192 7.07      
17 A 1154 1148 2.28      
18 A 1124 1118 124.51      
19 A 1093 1087 117.48      
20 A 1039 1033 100.55      
21 A 993 988 25.05      
22 A 945 940 7.29      
23 A 861 856 157.64      
24 A 775 771 20.55      
25 A 705 701 29.47      
26 A 631 628 67.09      
27 A 566 563 143.56      
28 A 538 535 10.51      
29 A 512 509 31.54      
30 A 403 401 6.47      
31 A 304 302 3.62      
32 A 289 288 5.39      
33 A 236 235 14.56      
34 A 217 216 21.73      
35 A 154 153 1.78      
36 A 17 17 0.29      

Unscaled Zero Point Vibrational Energy (zpe) 24035.9 cm-1
Scaled (by 0.9945) Zero Point Vibrational Energy (zpe) 23903.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/6-31G(2df,p)
ABC
0.11731 0.07767 0.04924

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/6-31G(2df,p)

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.798 -0.547 0.006
O2 2.085 -0.333 -0.374
O3 0.431 -1.571 0.558
C4 -0.093 0.677 -0.309
C5 -1.537 0.433 0.193
O6 -2.140 -0.710 -0.390
N7 0.426 1.946 0.229
H8 2.595 -1.131 -0.137
H9 -0.130 0.766 -1.408
H10 -1.524 0.378 1.300
H11 -2.143 1.307 -0.087
H12 -1.672 -1.479 -0.024
H13 1.334 2.175 -0.176
H14 0.549 1.890 1.242

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.35871.21971.54652.53942.96862.53081.89482.14132.81483.47752.64042.78032.7437
O21.35872.26612.40153.74524.24132.88260.97622.68024.04134.54333.94362.62553.1477
O31.21972.26612.46602.83292.87233.53262.31463.10542.85903.91472.18473.92253.5298
C41.54652.40152.46601.54822.47381.47323.24391.10332.17432.15562.68782.07312.0711
C52.53943.74522.83291.54821.41782.47904.43042.15741.10881.09941.92923.37832.7525
O62.96864.24132.87232.47381.41783.74484.75992.69352.10262.04030.97134.52064.0810
N72.53082.88263.53261.47322.47903.74483.78232.09372.72202.66564.02501.01991.0217
H81.89480.97622.31463.24394.43044.75993.78233.55524.61615.32814.28293.53853.9000
H92.14132.68023.10541.10332.15742.69352.09373.55523.07092.46773.05532.37642.9577
H102.81484.04132.85902.17431.10882.10262.72204.61613.07091.78022.28583.68452.5667
H113.47754.54333.91472.15561.09942.04032.66565.32812.46771.78022.82643.58403.0578
H122.64043.94362.18472.68781.92920.97134.02504.28293.05532.28582.82644.73424.2295
H132.78032.62553.92252.07313.37834.52061.01993.53852.37643.68453.58404.73421.6450
H142.74373.14773.52982.07112.75254.08101.02173.90002.95772.56673.05784.22951.6450

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.354 C1 C4 C5 110.279
C1 C4 N7 113.856 C1 C4 H9 106.625
O2 C1 O3 122.920 O2 C1 C4 111.343
O3 C1 C4 125.706 C4 C5 O6 112.960
C4 C5 H10 108.705 C4 C5 H11 107.807
C4 N7 H13 111.212 C4 N7 H14 110.929
C5 C4 N7 110.239 C5 C4 H9 107.728
C5 O6 H12 106.196 O6 C5 H10 112.065
O6 C5 H11 107.625 N7 C4 H9 107.843
H10 C5 H11 107.444 H13 N7 H14 107.369
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/6-31G(2df,p) Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.363      
2 O -0.325      
3 O -0.317      
4 C -0.110      
5 C -0.054      
6 O -0.372      
7 N -0.461      
8 H 0.283      
9 H 0.111      
10 H 0.066      
11 H 0.107      
12 H 0.272      
13 H 0.224      
14 H 0.213      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.269 0.351 0.616 3.345
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.246 -2.258 -0.625
y -2.258 -44.124 0.911
z -0.625 0.911 -39.070
Traceless
 xyz
x 0.351 -2.258 -0.625
y -2.258 -3.966 0.911
z -0.625 0.911 3.615
Polar
3z2-r27.229
x2-y22.878
xy-2.258
xz-0.625
yz0.911


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.881 0.098 0.013
y 0.098 8.294 -0.011
z 0.013 -0.011 6.055


<r2> (average value of r2) Å2
<r2> 220.323
(<r2>)1/2 14.843