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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/6-31G(2df,p)

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/6-31G(2df,p)
 hartrees
Energy at 0K-398.590864
Energy at 298.15K-398.600921
HF Energy-398.590864
Nuclear repulsion energy327.256252
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/6-31G(2df,p)
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3793 3632 37.16      
2 A 3780 3620 147.80      
3 A 3625 3472 5.18      
4 A 3538 3389 1.42      
5 A 3119 2987 21.80      
6 A 3050 2921 13.02      
7 A 2969 2844 60.47      
8 A 1833 1755 236.32      
9 A 1666 1596 34.10      
10 A 1505 1442 1.72      
11 A 1462 1400 52.07      
12 A 1399 1340 71.42      
13 A 1392 1333 24.95      
14 A 1382 1324 6.06      
15 A 1324 1268 11.56      
16 A 1241 1189 5.72      
17 A 1212 1160 20.14      
18 A 1195 1144 170.11      
19 A 1164 1115 50.07      
20 A 1130 1082 98.23      
21 A 1036 992 37.34      
22 A 1000 958 0.55      
23 A 889 852 168.64      
24 A 819 784 33.78      
25 A 751 719 34.23      
26 A 653 626 79.59      
27 A 591 566 129.34      
28 A 568 544 37.86      
29 A 541 518 32.83      
30 A 424 406 6.80      
31 A 315 302 4.68      
32 A 301 288 5.96      
33 A 245 235 10.47      
34 A 226 216 29.25      
35 A 163 156 1.63      
36 A 26 25 0.40      

Unscaled Zero Point Vibrational Energy (zpe) 25163.1 cm-1
Scaled (by 0.9577) Zero Point Vibrational Energy (zpe) 24098.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/6-31G(2df,p)
ABC
0.12087 0.08036 0.05086

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/6-31G(2df,p)

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.766 -0.546 0.000
O2 2.046 -0.357 -0.345
O3 0.371 -1.554 0.530
C4 -0.083 0.679 -0.315
C5 -1.505 0.454 0.186
O6 -2.086 -0.690 -0.373
N7 0.452 1.917 0.223
H8 2.520 -1.161 -0.104
H9 -0.117 0.765 -1.408
H10 -1.490 0.411 1.287
H11 -2.106 1.319 -0.104
H12 -1.604 -1.433 -0.002
H13 1.359 2.118 -0.175
H14 0.570 1.846 1.227

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.33931.20581.52302.48822.88012.49241.86252.11702.76683.42622.53032.73422.6945
O21.33932.23742.36783.68114.14572.83440.96482.65863.96874.48433.82052.57343.0822
O31.20582.23742.43052.76952.75673.48582.27543.06152.80983.84672.04833.86763.4767
C41.52302.36782.43051.52472.42671.45203.19531.09722.14842.13272.62132.04212.0408
C52.48823.68112.76951.52471.39872.44394.34742.13671.10171.09321.89873.33272.7071
O62.88014.14572.75672.42671.39873.68644.63872.65782.07852.02680.96094.44884.0052
N72.49242.83443.48581.45202.44393.68643.72342.07682.67742.64723.93681.01141.0129
H81.86250.96482.27543.19534.34744.63873.72343.51704.52615.25004.13433.47933.8235
H92.11702.65863.06151.09722.13672.65782.07683.51703.04502.44223.00292.35202.9299
H102.76683.96872.80982.14841.10172.07852.67744.52613.04501.77242.25253.62872.5109
H113.42624.48433.84672.13271.09322.02682.64725.25002.44221.77242.80003.55723.0350
H122.53033.82052.04832.62131.89870.96093.93684.13433.00292.25252.80004.62804.1214
H132.73422.57343.86762.04213.33274.44881.01143.47932.35203.62873.55724.62801.6317
H142.69453.08223.47672.04082.70714.00521.01293.82352.92992.51093.03504.12141.6317

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.738 C1 C4 C5 109.454
C1 C4 N7 113.789 C1 C4 H9 106.663
O2 C1 O3 122.984 O2 C1 C4 111.465
O3 C1 C4 125.518 C4 C5 O6 112.143
C4 C5 H10 108.704 C4 C5 H11 107.969
C4 N7 H13 110.713 C4 N7 H14 110.510
C5 C4 N7 110.347 C5 C4 H9 108.055
C5 O6 H12 105.655 O6 C5 H10 111.913
O6 C5 H11 108.232 N7 C4 H9 108.313
H10 C5 H11 107.710 H13 N7 H14 107.418
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/6-31G(2df,p) Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.452      
2 O -0.394      
3 O -0.378      
4 C -0.157      
5 C -0.081      
6 O -0.448      
7 N -0.559      
8 H 0.320      
9 H 0.161      
10 H 0.104      
11 H 0.149      
12 H 0.314      
13 H 0.265      
14 H 0.253      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.418 0.410 0.650 3.503
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -40.831 -2.418 -0.617
y -2.418 -43.803 1.017
z -0.617 1.017 -38.618
Traceless
 xyz
x 0.380 -2.418 -0.617
y -2.418 -4.079 1.017
z -0.617 1.017 3.699
Polar
3z2-r27.398
x2-y22.972
xy-2.418
xz-0.617
yz1.017


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.220 0.129 0.001
y 0.129 7.817 -0.003
z 0.001 -0.003 5.870


<r2> (average value of r2) Å2
<r2> 214.011
(<r2>)1/2 14.629