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All results from a given calculation for C5H4N4 (purine)

using model chemistry: PBEPBE/3-21G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at PBEPBE/3-21G
 hartrees
Energy at 0K-409.183492
Energy at 298.15K-409.191305
HF Energy-409.183492
Nuclear repulsion energy406.334268
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/3-21G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3494 3462 72.10      
2 A' 3215 3186 0.43      
3 A' 3146 3118 16.38      
4 A' 3127 3099 12.44      
5 A' 1556 1542 46.38      
6 A' 1511 1497 27.74      
7 A' 1412 1399 33.26      
8 A' 1404 1391 5.74      
9 A' 1371 1359 7.76      
10 A' 1338 1325 18.13      
11 A' 1312 1301 19.28      
12 A' 1242 1230 34.53      
13 A' 1221 1210 38.20      
14 A' 1191 1181 46.98      
15 A' 1142 1131 6.63      
16 A' 1068 1059 4.05      
17 A' 1035 1026 15.12      
18 A' 910 901 0.88      
19 A' 863 855 10.44      
20 A' 765 758 9.60      
21 A' 646 640 0.59      
22 A' 555 550 3.33      
23 A' 425 421 13.34      
24 A" 988 979 3.22      
25 A" 934 926 16.74      
26 A" 867 859 1.58      
27 A" 842 834 26.44      
28 A" 655 649 31.91      
29 A" 642 636 118.30      
30 A" 617 612 17.80      
31 A" 429 425 2.26      
32 A" 249 247 0.56      
33 A" 236 234 6.06      

Unscaled Zero Point Vibrational Energy (zpe) 20204.4 cm-1
Scaled (by 0.9909) Zero Point Vibrational Energy (zpe) 20020.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/3-21G
ABC
0.13415 0.05677 0.03989

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/3-21G

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.841 -1.279 0.000
C2 -2.147 0.062 0.000
N3 -1.292 1.106 0.000
C4 0.000 0.713 0.000
C5 0.460 -0.637 0.000
C6 -0.540 -1.626 0.000
N7 1.864 -0.698 0.000
C8 2.222 0.588 0.000
N9 1.141 1.492 0.000
H10 -3.210 0.301 0.000
H11 -0.292 -2.690 0.000
H12 3.251 0.929 0.000
H13 1.172 2.512 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.37482.44732.71242.38911.34653.75044.47094.07092.09082.09575.54974.8426
C21.37481.34982.24342.69892.33034.08214.40003.58561.09003.31855.46684.1256
N32.44731.34981.35022.47132.83403.63523.55162.46332.08013.92574.54612.8370
C42.71242.24341.35021.42632.40112.33802.22531.38183.23633.41593.25802.1473
C52.38912.69892.47131.42631.40711.40522.14522.23543.78832.18683.19973.2286
C61.34652.33032.83402.40111.40712.57733.53973.54313.29321.09244.57164.4789
N73.75044.08213.63522.33801.40522.57731.33432.30665.17162.93562.13743.2840
C84.47094.40003.55162.22532.14523.53971.33431.40955.43924.13061.08422.1924
N94.07093.58562.46331.38182.23543.54312.30661.40954.51114.42132.18391.0204
H102.09081.09002.08013.23633.78833.29325.17165.43924.51114.17926.49124.9082
H112.09573.31853.92573.41592.18681.09242.93564.13064.42134.17925.06435.4046
H125.54975.46684.54613.25803.19974.57162.13741.08422.18396.49125.06432.6134
H134.84264.12562.83702.14733.22864.47893.28402.19241.02044.90825.40462.6134

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.851 N1 C2 H10 115.566
N1 C6 C5 120.349 N1 C6 H11 118.096
C2 N1 C6 117.811 C2 N3 C4 112.383
N3 C2 H10 116.583 N3 C4 C5 125.744
N3 C4 N9 128.752 C4 C5 C6 115.862
C4 C5 N7 111.318 C4 N9 C8 105.731
C4 N9 H13 126.073 C5 C4 N9 105.504
C5 C6 H11 121.554 C5 N7 C8 103.052
C6 C5 N7 132.819 N7 C8 N9 114.395
N7 C8 H12 123.874 C8 N9 H13 128.197
N9 C8 H12 121.731
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/3-21G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.484      
2 C 0.147      
3 N -0.538      
4 C 0.596      
5 C 0.129      
6 C 0.068      
7 N -0.516      
8 C 0.249      
9 N -0.725      
10 H 0.240      
11 H 0.241      
12 H 0.248      
13 H 0.345      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.144 3.105 0.000 3.773
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.805 6.199 0.000
y 6.199 -46.877 0.000
z 0.000 0.000 -52.524
Traceless
 xyz
x -0.104 6.199 0.000
y 6.199 4.288 0.000
z 0.000 0.000 -4.184
Polar
3z2-r2-8.367
x2-y2-2.928
xy6.199
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.520 1.429 0.000
y 1.429 10.876 0.000
z 0.000 0.000 3.246


<r2> (average value of r2) Å2
<r2> 260.718
(<r2>)1/2 16.147