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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/3-21G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/3-21G
 hartrees
Energy at 0K-396.344292
Energy at 298.15K-396.354407
HF Energy-396.344292
Nuclear repulsion energy325.253846
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/3-21G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3570 3439 3.40      
2 A 3530 3401 30.64      
3 A 3470 3343 0.71      
4 A 3409 3284 102.72      
5 A 3162 3045 21.80      
6 A 3094 2981 6.01      
7 A 2988 2878 69.77      
8 A 1754 1690 160.23      
9 A 1734 1670 20.73      
10 A 1573 1515 0.98      
11 A 1492 1437 93.52      
12 A 1414 1362 17.72      
13 A 1403 1351 34.55      
14 A 1396 1345 18.67      
15 A 1348 1299 10.41      
16 A 1262 1215 16.08      
17 A 1211 1167 3.97      
18 A 1175 1132 19.28      
19 A 1142 1100 208.97      
20 A 1064 1025 84.80      
21 A 1046 1007 51.17      
22 A 984 948 8.84      
23 A 815 785 35.29      
24 A 738 711 70.08      
25 A 727 700 265.01      
26 A 688 663 155.82      
27 A 661 636 162.84      
28 A 568 548 3.37      
29 A 542 522 59.86      
30 A 413 398 10.05      
31 A 316 304 3.28      
32 A 294 283 8.91      
33 A 257 248 4.24      
34 A 224 216 52.57      
35 A 172 166 1.61      
36 A 55 53 0.81      

Unscaled Zero Point Vibrational Energy (zpe) 24844.4 cm-1
Scaled (by 0.9633) Zero Point Vibrational Energy (zpe) 23932.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/3-21G
ABC
0.11827 0.08127 0.05079

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/3-21G

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.711 -0.581 0.003
O2 2.027 -0.464 -0.326
O3 0.226 -1.579 0.525
C4 -0.044 0.695 -0.325
C5 -1.466 0.537 0.192
O6 -2.099 -0.612 -0.377
N7 0.578 1.908 0.216
H8 2.524 -1.290 -0.103
H9 -0.079 0.777 -1.417
H10 -1.421 0.500 1.294
H11 -2.025 1.430 -0.091
H12 -1.648 -1.409 -0.012
H13 1.487 2.099 -0.210
H14 0.673 1.874 1.234

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.36201.22561.51852.45492.83522.50141.94972.11812.71643.39692.50042.79832.7466
O21.36202.28252.37343.67114.12872.83210.98932.67703.93004.47923.80812.62213.1203
O31.22562.28252.44252.72992.67443.51792.39923.06842.76163.80831.95713.95673.5532
C41.51852.37342.44251.52222.43611.46563.25321.09612.13432.12602.66512.08002.0813
C52.45493.67112.72991.52221.42962.46144.39872.13881.10321.09121.96543.36532.7293
O62.83524.12872.67442.43611.42963.72334.68012.66302.11852.06380.98604.49824.0566
N72.50142.83213.51791.46562.46143.72333.75692.09152.67202.66364.00131.02191.0233
H81.94970.98932.39923.25324.39874.68013.75693.57444.55155.30024.17503.54573.9018
H92.11812.67703.06841.09612.13882.66302.09153.57443.03792.44353.03662.37832.9657
H102.71643.93002.76162.13431.10322.11852.67204.55153.03791.77492.32413.64342.5051
H113.39694.47923.80832.12601.09122.06382.66365.30022.44351.77492.86593.57683.0380
H122.50043.80811.95712.66511.96540.98604.00134.17503.03662.32412.86594.70944.2094
H132.79832.62213.95672.08003.36534.49821.02193.54572.37833.64343.57684.70941.6726
H142.74663.12033.55322.08132.72934.05661.02333.90182.96572.50513.03804.20941.6726

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 111.041 C1 C4 C5 107.675
C1 C4 N7 113.898 C1 C4 H9 107.100
O2 C1 O3 123.701 O2 C1 C4 110.845
O3 C1 C4 125.431 C4 C5 O6 111.197
C4 C5 H10 107.705 C4 C5 H11 107.733
C4 N7 H13 112.252 C4 N7 H14 112.270
C5 C4 N7 110.927 C5 C4 H9 108.447
C5 O6 H12 107.482 O6 C5 H10 112.893
O6 C5 H11 109.167 N7 C4 H9 108.606
H10 C5 H11 107.966 H13 N7 H14 109.736
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/3-21G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.680      
2 O -0.571      
3 O -0.507      
4 C -0.259      
5 C -0.137      
6 O -0.588      
7 N -0.682      
8 H 0.386      
9 H 0.293      
10 H 0.183      
11 H 0.253      
12 H 0.362      
13 H 0.301      
14 H 0.289      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  4.150 0.055 0.753 4.219
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -42.531 -3.309 -0.395
y -3.309 -43.753 0.512
z -0.395 0.512 -38.387
Traceless
 xyz
x -1.461 -3.309 -0.395
y -3.309 -3.294 0.512
z -0.395 0.512 4.755
Polar
3z2-r29.510
x2-y21.222
xy-3.309
xz-0.395
yz0.512


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 7.194 0.229 0.142
y 0.229 6.706 0.054
z 0.142 0.054 4.691


<r2> (average value of r2) Å2
<r2> 214.884
(<r2>)1/2 14.659