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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP2/STO-3G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP2/STO-3G
 hartrees
Energy at 0K-391.880446
Energy at 298.15K-391.890080
HF Energy-391.518442
Nuclear repulsion energy316.960250
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/STO-3G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3860 3366 16.20      
2 A 3841 3349 28.60      
3 A 3775 3291 9.73      
4 A 3589 3129 9.48      
5 A 3475 3030 5.11      
6 A 3420 2982 0.92      
7 A 3329 2903 18.94      
8 A 1910 1665 7.49      
9 A 1828 1594 33.53      
10 A 1716 1497 13.13      
11 A 1694 1477 43.29      
12 A 1561 1361 0.92      
13 A 1543 1345 25.22      
14 A 1524 1329 4.33      
15 A 1463 1275 14.66      
16 A 1363 1188 0.89      
17 A 1330 1160 3.27      
18 A 1284 1119 62.05      
19 A 1257 1096 76.83      
20 A 1180 1029 11.44      
21 A 1126 982 30.19      
22 A 1074 936 5.26      
23 A 1035 903 44.15      
24 A 821 716 5.42      
25 A 686 598 50.83      
26 A 637 555 70.28      
27 A 620 541 75.39      
28 A 565 493 6.62      
29 A 506 441 45.16      
30 A 420 366 6.12      
31 A 325 284 2.54      
32 A 278 242 16.95      
33 A 262 228 29.11      
34 A 228 199 9.54      
35 A 166 145 1.15      
36 A 58 51 0.57      

Unscaled Zero Point Vibrational Energy (zpe) 26873.3 cm-1
Scaled (by 0.8719) Zero Point Vibrational Energy (zpe) 23430.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/STO-3G
ABC
0.11247 0.07672 0.04807

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/STO-3G

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.804 -0.558 0.013
O2 2.112 -0.334 -0.372
O3 0.415 -1.609 0.549
C4 -0.087 0.694 -0.313
C5 -1.551 0.443 0.193
O6 -2.163 -0.709 -0.398
N7 0.434 1.973 0.235
H8 2.606 -1.167 -0.134
H9 -0.111 0.790 -1.414
H10 -1.536 0.383 1.303
H11 -2.161 1.320 -0.085
H12 -1.662 -1.466 0.012
H13 1.362 2.180 -0.176
H14 0.558 1.895 1.261

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.38241.24221.57102.56482.99872.56741.90852.16642.83283.51112.62742.80072.7632
O21.38242.31442.42843.78694.29172.91600.99792.70094.07784.59123.95912.62993.1697
O31.24222.31442.50992.86392.89023.59572.33773.14502.88853.95212.15013.97223.5782
C41.57102.42842.50991.56882.50661.48583.27901.10572.19252.17832.69272.08042.0826
C52.56483.78692.86391.56881.43212.50644.47022.18561.11131.10431.92083.41172.7741
O62.99874.29172.89022.50661.43213.78634.79862.73682.11622.05280.99614.56304.1153
N72.56742.91603.59571.48582.50643.78633.83592.10122.74752.69534.03341.03611.0369
H81.90850.99792.33773.27904.47024.79863.83593.58594.65065.37774.28133.57083.9392
H92.16642.70093.14501.10572.18562.73682.10123.58593.09502.49973.08722.37382.9709
H102.83284.07782.88852.19251.11132.11622.74754.65063.09501.78762.25883.71702.5830
H113.51114.59123.95212.17831.10432.05282.69535.37772.49971.78762.83213.62823.0885
H122.62743.95912.15012.69271.92080.99614.03344.28133.08722.25882.83214.74064.2171
H132.80072.62993.97222.08043.41174.56301.03613.57082.37383.71703.62824.74061.6717
H142.76323.16973.57822.08262.77414.11531.03693.93922.97092.58303.08854.21711.6717

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 105.461 C1 C4 C5 109.548
C1 C4 N7 114.231 C1 C4 H9 106.780
O2 C1 O3 123.639 O2 C1 C4 110.459
O3 C1 C4 125.900 C4 C5 O6 113.212
C4 C5 H10 108.574 C4 C5 H11 107.892
C4 N7 H13 109.875 C4 N7 H14 110.013
C5 C4 N7 110.242 C5 C4 H9 108.370
C5 O6 H12 103.091 O6 C5 H10 111.999
O6 C5 H11 107.357 N7 C4 H9 107.444
H10 C5 H11 107.575 H13 N7 H14 107.493
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability