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All results from a given calculation for C5H4N4 (purine)

using model chemistry: M06-2X/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at M06-2X/6-311G**
 hartrees
Energy at 0K-411.889793
Energy at 298.15K-411.897765
HF Energy-411.889793
Nuclear repulsion energy413.777760
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at M06-2X/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3688 3688 122.64      
2 A' 3254 3254 0.12      
3 A' 3216 3216 11.28      
4 A' 3195 3195 7.89      
5 A' 1696 1696 74.97      
6 A' 1661 1661 92.37      
7 A' 1563 1563 32.98      
8 A' 1514 1514 2.38      
9 A' 1454 1454 85.88      
10 A' 1430 1430 26.53      
11 A' 1387 1387 59.66      
12 A' 1328 1328 15.18      
13 A' 1309 1309 0.21      
14 A' 1274 1274 50.64      
15 A' 1217 1217 7.36      
16 A' 1154 1154 7.49      
17 A' 1088 1088 17.21      
18 A' 956 956 1.05      
19 A' 922 922 12.45      
20 A' 819 819 15.07      
21 A' 667 667 0.29      
22 A' 574 574 3.65      
23 A' 446 446 13.44      
24 A" 1023 1023 0.20      
25 A" 969 969 12.20      
26 A" 915 915 6.19      
27 A" 830 830 11.16      
28 A" 673 673 8.93      
29 A" 631 631 21.19      
30 A" 546 546 103.13      
31 A" 427 427 4.89      
32 A" 253 253 0.58      
33 A" 233 233 5.76      

Unscaled Zero Point Vibrational Energy (zpe) 21153.8 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 21153.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at M06-2X/6-311G**
ABC
0.13901 0.05886 0.04135

See section I.F.4 to change rotational constant units
Geometric Data calculated at M06-2X/6-311G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.810 -1.249 0.000
C2 -2.098 0.069 0.000
N3 -1.267 1.097 0.000
C4 0.000 0.700 0.000
C5 0.450 -0.623 0.000
C6 -0.539 -1.604 0.000
N7 1.829 -0.686 0.000
C8 2.178 0.564 0.000
N9 1.127 1.460 0.000
H10 -3.153 0.309 0.000
H11 -0.313 -2.664 0.000
H12 3.205 0.894 0.000
H13 1.170 2.466 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34912.40732.66002.34491.31953.68234.38123.99532.05642.06025.45364.7623
C21.34911.32082.19042.63962.28633.99864.30453.51141.08203.26455.36604.0522
N32.40731.32081.32772.42972.79653.57273.48642.42132.04343.87974.47642.7955
C42.66002.19041.32771.39742.36622.29512.18251.35893.17703.37893.21052.1181
C52.34492.63962.42971.39741.39281.38072.09712.19013.72092.17913.14523.1717
C61.31952.28632.79652.36621.39282.53973.47643.48733.23851.08434.50084.4140
N73.68233.99863.57272.29511.38072.53971.29852.25825.08012.91542.09563.2205
C84.38124.30453.48642.18252.09713.47641.29851.38135.33724.07791.07812.1526
N93.99533.51142.42131.35892.19013.48732.25821.38134.43154.36812.15351.0070
H102.05641.08202.04343.17703.72093.23855.08015.33724.43154.11136.38434.8309
H112.06023.26453.87973.37892.17911.08432.91544.07794.36814.11135.00385.3401
H125.45365.36604.47643.21053.14524.50082.09561.07812.15356.38435.00382.5710
H134.76234.05222.79552.11813.17174.41403.22052.15261.00704.83095.34012.5710

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.742 N1 C2 H10 115.089
N1 C6 C5 119.636 N1 C6 H11 117.645
C2 N1 C6 117.904 C2 N3 C4 111.593
N3 C2 H10 116.169 N3 C4 C5 126.131
N3 C4 N9 128.646 C4 C5 C6 115.994
C4 C5 N7 111.402 C4 N9 C8 105.588
C4 N9 H13 126.447 C5 C4 N9 105.223
C5 C6 H11 122.719 C5 N7 C8 102.977
C6 C5 N7 132.605 N7 C8 N9 114.810
N7 C8 H12 123.445 C8 N9 H13 127.965
N9 C8 H12 121.745
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at M06-2X/6-311G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.356      
2 C 0.137      
3 N -0.352      
4 C 0.424      
5 C -0.110      
6 C 0.163      
7 N -0.357      
8 C 0.215      
9 N -0.481      
10 H 0.143      
11 H 0.155      
12 H 0.150      
13 H 0.270      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.191 2.945 0.000 3.671
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.989 6.192 0.000
y 6.192 -47.216 0.000
z 0.000 0.000 -52.154
Traceless
 xyz
x -0.304 6.192 0.000
y 6.192 3.855 0.000
z 0.000 0.000 -3.552
Polar
3z2-r2-7.103
x2-y2-2.773
xy6.192
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.673 1.339 0.000
y 1.339 11.572 0.000
z 0.000 0.000 5.063


<r2> (average value of r2) Å2
<r2> 252.749
(<r2>)1/2 15.898