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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/6-311G**
 hartrees
Energy at 0K-398.671581
Energy at 298.15K-398.681657
HF Energy-398.671581
Nuclear repulsion energy326.997006
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3805 3654 56.91      
2 A 3797 3647 118.57      
3 A 3621 3477 5.01      
4 A 3535 3395 1.40      
5 A 3128 3004 20.89      
6 A 3050 2929 14.55      
7 A 2983 2864 60.90      
8 A 1826 1753 271.10      
9 A 1670 1604 38.73      
10 A 1506 1447 3.35      
11 A 1453 1395 43.18      
12 A 1399 1344 7.47      
13 A 1395 1340 66.10      
14 A 1383 1329 21.57      
15 A 1327 1274 7.93      
16 A 1247 1198 11.43      
17 A 1209 1161 36.65      
18 A 1192 1145 182.97      
19 A 1158 1112 32.75      
20 A 1122 1077 110.03      
21 A 1039 998 36.46      
22 A 1004 964 0.22      
23 A 880 845 170.84      
24 A 823 790 42.77      
25 A 752 722 32.41      
26 A 648 622 94.40      
27 A 584 561 86.89      
28 A 570 548 116.83      
29 A 533 512 21.24      
30 A 433 416 7.64      
31 A 312 300 5.89      
32 A 295 284 7.01      
33 A 251 241 25.66      
34 A 224 215 15.92      
35 A 167 160 2.02      
36 A 29 28 0.56      

Unscaled Zero Point Vibrational Energy (zpe) 25172.5 cm-1
Scaled (by 0.9604) Zero Point Vibrational Energy (zpe) 24175.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/6-311G**
ABC
0.12091 0.07961 0.05105

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/6-311G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.769 -0.547 -0.003
O2 2.049 -0.355 -0.347
O3 0.380 -1.555 0.532
C4 -0.084 0.676 -0.313
C5 -1.506 0.452 0.189
O6 -2.098 -0.686 -0.375
N7 0.453 1.915 0.223
H8 2.530 -1.156 -0.107
H9 -0.123 0.760 -1.405
H10 -1.490 0.402 1.289
H11 -2.100 1.322 -0.096
H12 -1.631 -1.441 -0.007
H13 1.354 2.127 -0.184
H14 0.574 1.852 1.226

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34001.20561.52242.49142.89412.49221.86722.11352.76883.42472.56122.74322.7019
O21.34002.23612.36953.68474.16062.83310.96512.66053.97144.48213.85262.58243.0856
O31.20562.23612.42992.77512.77803.48452.27883.05932.80993.84952.08533.87543.4819
C41.52242.36952.42991.52412.43201.45293.19911.09582.14812.12792.63992.04752.0457
C52.49143.68472.77511.52411.40182.44464.35492.13231.10041.09111.90793.33532.7127
O62.89414.16062.77802.43201.40183.69194.66002.65542.07842.02680.96084.45764.0179
N72.49222.83313.48451.45292.44463.69193.72272.07742.68322.64033.95751.01151.0132
H81.86720.96512.27883.19914.35494.66003.72273.52044.53175.25174.17273.48833.8280
H92.11352.66053.05931.09582.13232.65542.07743.52043.04112.43643.01182.35452.9329
H102.76883.97142.80992.14811.10042.07842.68324.53173.04111.77112.25733.63772.5228
H113.42474.48213.84952.12791.09112.02682.64035.25172.43641.77112.80373.54823.0302
H122.56123.85262.08532.63991.90790.96083.95754.17273.01182.25732.80374.65604.1507
H132.74322.58243.87542.04753.33534.45761.01153.48832.35453.63773.54824.65601.6353
H142.70193.08563.48192.04572.71274.01791.01323.82802.93292.52283.03024.15071.6353

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.078 C1 C4 C5 109.732
C1 C4 N7 113.762 C1 C4 H9 106.511
O2 C1 O3 122.822 O2 C1 C4 111.586
O3 C1 C4 125.536 C4 C5 O6 112.377
C4 C5 H10 108.796 C4 C5 H11 107.763
C4 N7 H13 111.099 C4 N7 H14 110.841
C5 C4 N7 110.384 C5 C4 H9 107.837
C5 O6 H12 106.206 O6 C5 H10 111.754
O6 C5 H11 108.139 N7 C4 H9 108.373
H10 C5 H11 107.832 H13 N7 H14 107.737
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/6-311G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.404      
2 O -0.327      
3 O -0.369      
4 C -0.203      
5 C -0.003      
6 O -0.391      
7 N -0.443      
8 H 0.261      
9 H 0.177      
10 H 0.100      
11 H 0.138      
12 H 0.245      
13 H 0.212      
14 H 0.197      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.435 0.408 0.700 3.529
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.612 -2.332 -0.993
y -2.332 -44.293 1.378
z -0.993 1.378 -39.433
Traceless
 xyz
x 0.251 -2.332 -0.993
y -2.332 -3.771 1.378
z -0.993 1.378 3.520
Polar
3z2-r27.040
x2-y22.681
xy-2.332
xz-0.993
yz1.378


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.170 0.154 -0.130
y 0.154 7.860 -0.077
z -0.130 -0.077 5.911


<r2> (average value of r2) Å2
<r2> 214.755
(<r2>)1/2 14.655