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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B2PLYP=FULL/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B2PLYP=FULL/6-311G**
 hartrees
Energy at 0K-398.758390
Energy at 298.15K-398.768480
HF Energy-398.322631
Nuclear repulsion energy325.748708
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B2PLYP=FULL/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3819 3819 72.91      
2 A 3780 3780 78.64      
3 A 3607 3607 3.81      
4 A 3521 3521 1.09      
5 A 3142 3142 21.33      
6 A 3070 3070 14.37      
7 A 3006 3006 55.90      
8 A 1791 1791 240.36      
9 A 1676 1676 34.07      
10 A 1524 1524 2.69      
11 A 1457 1457 45.51      
12 A 1414 1414 1.66      
13 A 1403 1403 23.65      
14 A 1388 1388 40.80      
15 A 1334 1334 8.59      
16 A 1255 1255 10.34      
17 A 1206 1206 8.93      
18 A 1182 1182 205.72      
19 A 1150 1150 49.58      
20 A 1102 1102 100.44      
21 A 1043 1043 38.72      
22 A 1007 1007 2.03      
23 A 900 900 177.32      
24 A 822 822 25.54      
25 A 743 743 28.62      
26 A 640 640 97.27      
27 A 579 579 16.56      
28 A 560 560 187.81      
29 A 525 525 17.72      
30 A 439 439 7.36      
31 A 310 310 6.02      
32 A 297 297 12.09      
33 A 261 261 27.91      
34 A 223 223 6.13      
35 A 170 170 2.70      
36 A 34 34 0.71      

Unscaled Zero Point Vibrational Energy (zpe) 25189.4 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 25189.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B2PLYP=FULL/6-311G**
ABC
0.11973 0.07855 0.05102

See section I.F.4 to change rotational constant units
Geometric Data calculated at B2PLYP=FULL/6-311G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.778 -0.546 0.002
O2 2.059 -0.345 -0.362
O3 0.400 -1.558 0.547
C4 -0.088 0.674 -0.310
C5 -1.513 0.445 0.193
O6 -2.113 -0.691 -0.384
N7 0.442 1.923 0.226
H8 2.547 -1.144 -0.125
H9 -0.127 0.757 -1.400
H10 -1.496 0.385 1.290
H11 -2.107 1.315 -0.086
H12 -1.650 -1.452 -0.022
H13 1.343 2.140 -0.181
H14 0.566 1.859 1.230

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34621.21001.52822.50412.92072.50241.87162.11822.77493.43452.59222.75122.7090
O21.34622.24732.37633.70024.18622.84660.96592.65953.98744.49263.88562.59243.1017
O31.21002.24732.43982.79232.81623.49662.28833.07082.81503.86482.13013.88553.4892
C41.52822.37632.43981.52912.44351.45943.20641.09402.15112.13052.65362.05292.0502
C52.50413.70022.79231.52911.40822.45194.37212.13451.09881.08941.91343.34262.7200
O62.92074.18622.81622.44351.40823.70654.68962.65972.08372.02790.96084.47254.0355
N72.50242.84663.49661.45942.45193.70653.73662.08022.69362.63953.97881.01171.0134
H81.87160.96592.28833.20644.37214.68963.73663.52074.54885.26394.21043.49823.8447
H92.11822.65953.07081.09402.13452.65972.08023.52073.04112.44043.01642.35842.9343
H102.77493.98742.81502.15111.09882.08372.69364.54883.04111.76922.26263.64732.5353
H113.43454.49263.86482.13051.08942.02792.63955.26392.44041.76922.80443.54883.0284
H122.59223.88562.13012.65361.91340.96083.97884.21043.01642.26262.80444.67834.1761
H132.75122.59243.88552.05293.34264.47251.01173.49822.35843.64733.54884.67831.6345
H142.70903.10173.48922.05022.72004.03551.01343.84472.93432.53533.02844.17611.6345

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.933 C1 C4 C5 109.982
C1 C4 N7 113.751 C1 C4 H9 106.581
O2 C1 O3 122.990 O2 C1 C4 111.366
O3 C1 C4 125.600 C4 C5 O6 112.524
C4 C5 H10 108.778 C4 C5 H11 107.719
C4 N7 H13 111.063 C4 N7 H14 110.722
C5 C4 N7 110.242 C5 C4 H9 107.774
C5 O6 H12 106.202 O6 C5 H10 111.841
O6 C5 H11 107.891 N7 C4 H9 108.264
H10 C5 H11 107.900 H13 N7 H14 107.630
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability