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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B97D3/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B97D3/6-311G**
 hartrees
Energy at 0K-398.846100
Energy at 298.15K-398.855938
HF Energy-398.846100
Nuclear repulsion energy323.995421
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3694 3642 56.96      
2 A 3669 3617 50.26      
3 A 3513 3463 1.04      
4 A 3425 3376 0.53      
5 A 3058 3014 27.68      
6 A 2992 2949 19.06      
7 A 2913 2872 67.90      
8 A 1739 1714 248.21      
9 A 1640 1617 29.52      
10 A 1473 1452 2.71      
11 A 1415 1395 53.07      
12 A 1369 1350 1.95      
13 A 1362 1342 8.17      
14 A 1337 1318 30.75      
15 A 1290 1272 6.16      
16 A 1221 1203 11.35      
17 A 1166 1149 3.54      
18 A 1129 1112 165.00      
19 A 1097 1081 108.57      
20 A 1050 1035 104.58      
21 A 1002 988 27.78      
22 A 972 958 3.30      
23 A 865 852 172.97      
24 A 795 784 19.10      
25 A 719 709 23.13      
26 A 621 612 86.66      
27 A 563 555 12.67      
28 A 551 543 176.85      
29 A 504 497 21.84      
30 A 432 426 8.84      
31 A 292 288 5.71      
32 A 288 284 12.05      
33 A 260 257 26.08      
34 A 212 209 4.14      
35 A 155 153 3.19      
36 A 9 9 0.90      

Unscaled Zero Point Vibrational Energy (zpe) 24395.6 cm-1
Scaled (by 0.9857) Zero Point Vibrational Energy (zpe) 24046.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/6-311G**
ABC
0.11777 0.07733 0.05100

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/6-311G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.788 -0.542 -0.000
O2 2.091 -0.317 -0.326
O3 0.422 -1.591 0.498
C4 -0.096 0.672 -0.314
C5 -1.527 0.443 0.206
O6 -2.143 -0.701 -0.363
N7 0.426 1.941 0.207
H8 2.571 -1.131 -0.093
H9 -0.144 0.745 -1.410
H10 -1.501 0.388 1.310
H11 -2.127 1.315 -0.074
H12 -1.629 -1.455 -0.037
H13 1.346 2.125 -0.189
H14 0.558 1.866 1.215

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.36201.21741.53462.52492.95812.51831.87982.12462.79673.45722.58412.73172.7076
O21.36202.25582.40073.73574.25222.85580.97282.70214.00974.52993.90122.55743.0809
O31.21742.25582.45942.83242.84833.54442.27603.06872.87633.90732.12373.89063.5337
C41.53462.40072.45941.53972.46541.46793.22691.09952.16572.14352.63652.05092.0473
C52.52493.73572.83241.53971.41832.46204.40042.14801.10551.09421.91643.35252.7190
O62.95814.25222.84832.46541.41833.72954.74172.68022.09622.03620.96934.49344.0469
N72.51832.85583.54441.46792.46203.72953.75862.09032.71032.64413.97741.01751.0196
H81.87980.97282.27603.22694.40044.74173.75863.55344.56695.29654.21303.48043.8400
H92.12462.70213.06871.09952.14802.68022.09033.55343.06012.45762.98832.36972.9393
H102.79674.00972.87632.16571.10552.09622.71034.56693.06011.77912.28593.65632.5370
H113.45724.52993.90732.14351.09422.03622.64415.29652.45761.77912.81443.56783.0291
H122.58413.90122.12372.63651.91640.96933.97744.21302.98832.28592.81444.65734.1693
H132.73172.55743.89062.05093.35254.49341.01753.48042.36973.65633.56784.65731.6302
H142.70763.08093.53372.04732.71904.04691.01963.84002.93932.53703.02914.16931.6302

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.111 C1 C4 C5 110.392
C1 C4 N7 113.705 C1 C4 H9 106.580
O2 C1 O3 122.783 O2 C1 C4 111.362
O3 C1 C4 125.778 C4 C5 O6 112.958
C4 C5 H10 108.627 C4 C5 H11 107.593
C4 N7 H13 111.098 C4 N7 H14 110.591
C5 C4 N7 110.173 C5 C4 H9 107.590
C5 O6 H12 106.122 O6 C5 H10 112.009
O6 C5 H11 107.717 N7 C4 H9 108.135
H10 C5 H11 107.711 H13 N7 H14 107.566
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/6-311G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.358      
2 O -0.317      
3 O -0.346      
4 C -0.148      
5 C 0.021      
6 O -0.386      
7 N -0.429      
8 H 0.252      
9 H 0.153      
10 H 0.086      
11 H 0.121      
12 H 0.239      
13 H 0.206      
14 H 0.190      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.176 0.434 0.641 3.269
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.268 -2.015 -1.074
y -2.015 -43.858 1.607
z -1.074 1.607 -40.136
Traceless
 xyz
x 0.729 -2.015 -1.074
y -2.015 -3.156 1.607
z -1.074 1.607 2.426
Polar
3z2-r24.853
x2-y22.590
xy-2.015
xz-1.074
yz1.607


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.629 0.059 -0.249
y 0.059 8.349 -0.161
z -0.249 -0.161 6.238


<r2> (average value of r2) Å2
<r2> 217.586
(<r2>)1/2 14.751