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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HSEh1PBE/6-31G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HSEh1PBE/6-31G**
 hartrees
Energy at 0K-411.530145
Energy at 298.15K-411.538051
HF Energy-411.530145
Nuclear repulsion energy413.492847
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/6-31G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3707 3537 98.64      
2 A' 3278 3128 0.59      
3 A' 3212 3065 16.24      
4 A' 3203 3057 15.43      
5 A' 1695 1618 65.81      
6 A' 1653 1578 80.64      
7 A' 1563 1492 29.14      
8 A' 1514 1445 4.09      
9 A' 1460 1393 67.79      
10 A' 1440 1374 20.35      
11 A' 1393 1329 63.79      
12 A' 1342 1281 18.62      
13 A' 1334 1273 11.10      
14 A' 1302 1243 29.92      
15 A' 1222 1166 7.40      
16 A' 1155 1102 6.08      
17 A' 1102 1052 13.28      
18 A' 952 909 1.47      
19 A' 920 878 12.19      
20 A' 818 781 14.82      
21 A' 664 633 0.46      
22 A' 573 547 4.08      
23 A' 448 428 12.85      
24 A" 1000 954 0.46      
25 A" 947 903 9.16      
26 A" 889 848 5.57      
27 A" 815 778 9.03      
28 A" 671 641 6.38      
29 A" 627 598 26.19      
30 A" 546 521 109.67      
31 A" 420 401 2.64      
32 A" 249 238 0.37      
33 A" 233 222 4.35      

Unscaled Zero Point Vibrational Energy (zpe) 21172.5 cm-1
Scaled (by 0.9543) Zero Point Vibrational Energy (zpe) 20204.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/6-31G**
ABC
0.13855 0.05887 0.04132

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/6-31G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.812 -1.251 0.000
C2 -2.096 0.067 0.000
N3 -1.267 1.099 0.000
C4 0.000 0.702 0.000
C5 0.452 -0.624 0.000
C6 -0.538 -1.605 0.000
N7 1.829 -0.689 0.000
C8 2.176 0.567 0.000
N9 1.125 1.462 0.000
H10 -3.154 0.307 0.000
H11 -0.311 -2.668 0.000
H12 3.203 0.900 0.000
H13 1.169 2.468 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34872.41252.66392.34861.32213.68394.38203.99792.05642.06375.45624.7657
C21.34871.32392.19012.64032.28613.99754.30083.51011.08443.26635.36384.0523
N32.41251.32391.32742.43412.80113.57503.48312.41902.04653.88674.47372.7935
C42.66392.19011.32741.40152.36942.29792.17981.35763.17833.38483.20882.1175
C52.34862.64032.43411.40151.39351.37872.09532.19233.72402.18173.14513.1744
C61.32212.28612.80112.36941.39352.53833.47593.48913.24041.08674.50224.4164
N73.68393.99753.57502.29791.37872.53831.30262.26305.08142.91572.10033.2251
C84.38204.30083.48312.17982.09533.47591.30261.38015.33554.08071.07982.1513
N93.99793.51012.41901.35762.19233.48912.26301.38014.43174.37292.15221.0070
H102.05641.08442.04653.17833.72403.24045.08145.33554.43174.11476.38394.8322
H112.06373.26633.88673.38482.18171.08672.91574.08074.37294.11475.00845.3453
H125.45625.36384.47373.20883.14514.50222.10031.07982.15226.38395.00842.5681
H134.76574.05232.79352.11753.17444.41643.22512.15131.00704.83225.34532.5681

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.025 N1 C2 H10 114.957
N1 C6 C5 119.708 N1 C6 H11 117.569
C2 N1 C6 117.729 C2 N3 C4 111.389
N3 C2 H10 116.018 N3 C4 C5 126.218
N3 C4 N9 128.558 C4 C5 C6 115.930
C4 C5 N7 111.483 C4 N9 C8 105.535
C4 N9 H13 126.516 C5 C4 N9 105.223
C5 C6 H11 122.723 C5 N7 C8 102.750
C6 C5 N7 132.586 N7 C8 N9 115.008
N7 C8 H12 123.404 C8 N9 H13 127.950
N9 C8 H12 121.588
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/6-31G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.447      
2 C 0.207      
3 N -0.494      
4 C 0.531      
5 C 0.173      
6 C 0.098      
7 N -0.504      
8 C 0.277      
9 N -0.608      
10 H 0.144      
11 H 0.155      
12 H 0.164      
13 H 0.304      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.216 2.984 0.000 3.717
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.584 6.167 0.000
y 6.167 -46.402 0.000
z 0.000 0.000 -51.197
Traceless
 xyz
x -0.784 6.167 0.000
y 6.167 3.989 0.000
z 0.000 0.000 -3.205
Polar
3z2-r2-6.409
x2-y2-3.182
xy6.167
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.624 1.343 0.000
y 1.343 11.348 0.000
z 0.000 0.000 4.252


<r2> (average value of r2) Å2
<r2> 252.498
(<r2>)1/2 15.890