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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/6-31G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/6-31G**
 hartrees
Energy at 0K-398.568451
Energy at 298.15K-398.578551
HF Energy-398.568451
Nuclear repulsion energy326.812255
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/6-31G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A 3799 3625 42.35      
2 A 3785 3612 136.67      
3 A 3637 3471 4.08      
4 A 3545 3383 1.04      
5 A 3139 2996 22.25      
6 A 3066 2926 12.31      
7 A 2984 2847 67.14      
8 A 1840 1756 243.85      
9 A 1678 1601 37.47      
10 A 1521 1452 1.70      
11 A 1464 1397 47.07      
12 A 1405 1341 66.33      
13 A 1402 1338 44.55      
14 A 1389 1326 10.05      
15 A 1329 1268 11.30      
16 A 1247 1190 7.42      
17 A 1218 1163 34.02      
18 A 1202 1147 164.60      
19 A 1168 1115 46.66      
20 A 1134 1082 106.41      
21 A 1041 993 39.15      
22 A 1005 959 0.82      
23 A 886 845 186.51      
24 A 820 782 40.08      
25 A 751 716 41.54      
26 A 659 629 89.66      
27 A 597 570 170.95      
28 A 572 546 32.49      
29 A 541 516 35.97      
30 A 426 407 8.06      
31 A 317 303 5.07      
32 A 303 289 8.76      
33 A 252 241 23.23      
34 A 233 222 19.55      
35 A 168 161 1.63      
36 A 32 31 0.36      

Unscaled Zero Point Vibrational Energy (zpe) 25277.3 cm-1
Scaled (by 0.9543) Zero Point Vibrational Energy (zpe) 24122.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/6-31G**
ABC
0.12061 0.08017 0.05074

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/6-31G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.765 -0.548 -0.004
O2 2.050 -0.358 -0.340
O3 0.366 -1.563 0.524
C4 -0.082 0.680 -0.315
C5 -1.506 0.459 0.187
O6 -2.092 -0.684 -0.371
N7 0.459 1.916 0.223
H8 2.527 -1.165 -0.100
H9 -0.119 0.767 -1.408
H10 -1.489 0.417 1.288
H11 -2.102 1.327 -0.103
H12 -1.617 -1.434 0.005
H13 1.363 2.121 -0.183
H14 0.580 1.847 1.227

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34191.21131.52422.49132.88392.49341.86922.11732.77183.42752.54132.74152.6993
O21.34192.24382.37173.68634.15532.83180.96752.66683.97224.48743.83732.57713.0784
O31.21132.24382.43612.77552.75943.49302.28433.06512.81893.85182.05353.88173.4882
C41.52422.37172.43611.52552.42991.45213.20271.09722.14912.13162.63182.04542.0440
C52.49133.68632.77551.52551.40112.44594.35672.13581.10191.09271.90463.33652.7128
O62.88394.15532.75942.42991.40113.69064.65212.65962.08112.02950.96394.45504.0130
N72.49342.83183.49301.45212.44593.69063.72442.07672.67882.64763.94661.01271.0142
H81.86920.96752.28433.20274.35674.65213.72443.52784.53415.25734.15423.48663.8234
H92.11732.66683.06511.09722.13582.65962.07673.52783.04452.43903.01392.35192.9324
H102.77183.97222.81892.14911.10192.08112.67884.53413.04451.77192.25563.63422.5162
H113.42754.48743.85182.13161.09272.02952.64765.25732.43901.77192.80543.55623.0388
H122.54133.83732.05352.63181.90460.96393.94664.15423.01392.25562.80544.64284.1333
H132.74152.57713.88172.04543.33654.45501.01273.48662.35193.63423.55624.64281.6365
H142.69933.07843.48822.04402.71284.01301.01423.82342.93242.51623.03884.13331.6365

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.955 C1 C4 C5 109.555
C1 C4 N7 113.786 C1 C4 H9 106.604
O2 C1 O3 122.923 O2 C1 C4 111.526
O3 C1 C4 125.500 C4 C5 O6 112.191
C4 C5 H10 108.686 C4 C5 H11 107.861
C4 N7 H13 110.905 C4 N7 H14 110.692
C5 C4 N7 110.435 C5 C4 H9 107.933
C5 O6 H12 105.801 O6 C5 H10 111.938
O6 C5 H11 108.308 N7 C4 H9 108.293
H10 C5 H11 107.677 H13 N7 H14 107.683
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/6-31G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.599      
2 O -0.495      
3 O -0.490      
4 C -0.120      
5 C 0.029      
6 O -0.558      
7 N -0.613      
8 H 0.341      
9 H 0.185      
10 H 0.099      
11 H 0.151      
12 H 0.336      
13 H 0.274      
14 H 0.261      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.621 0.326 0.715 3.705
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.237 -2.360 -0.732
y -2.360 -44.114 0.977
z -0.732 0.977 -38.760
Traceless
 xyz
x 0.200 -2.360 -0.732
y -2.360 -4.115 0.977
z -0.732 0.977 3.915
Polar
3z2-r27.831
x2-y22.877
xy-2.360
xz-0.732
yz0.977


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 7.795 0.208 0.016
y 0.208 7.481 -0.016
z 0.016 -0.016 5.472


<r2> (average value of r2) Å2
<r2> 214.641
(<r2>)1/2 14.651