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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B2PLYP=FULL/6-31G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B2PLYP=FULL/6-31G**
 hartrees
Energy at 0K-398.597980
Energy at 298.15K-398.608063
HF Energy-398.219315
Nuclear repulsion energy325.530581
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B2PLYP=FULL/6-31G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3805 3805 67.99      
2 A 3778 3778 76.27      
3 A 3632 3632 2.87      
4 A 3537 3537 0.77      
5 A 3166 3166 22.58      
6 A 3094 3094 12.80      
7 A 3023 3023 58.64      
8 A 1805 1805 219.65      
9 A 1693 1693 32.17      
10 A 1544 1544 1.47      
11 A 1464 1464 48.43      
12 A 1422 1422 1.63      
13 A 1410 1410 39.95      
14 A 1398 1398 38.68      
15 A 1342 1342 14.79      
16 A 1258 1258 8.31      
17 A 1213 1213 9.97      
18 A 1188 1188 195.28      
19 A 1157 1157 43.97      
20 A 1112 1112 104.94      
21 A 1045 1045 43.31      
22 A 1011 1011 0.84      
23 A 903 903 189.44      
24 A 820 820 25.09      
25 A 742 742 35.90      
26 A 650 650 96.79      
27 A 582 582 107.07      
28 A 573 573 105.92      
29 A 527 527 26.19      
30 A 436 436 7.28      
31 A 312 312 6.06      
32 A 301 301 13.35      
33 A 263 263 30.56      
34 A 229 229 6.05      
35 A 171 171 2.29      
36 A 28 28 0.65      

Unscaled Zero Point Vibrational Energy (zpe) 25315.6 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 25315.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B2PLYP=FULL/6-31G**
ABC
0.11974 0.07882 0.05077

See section I.F.4 to change rotational constant units
Geometric Data calculated at B2PLYP=FULL/6-31G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.774 -0.547 0.001
O2 2.060 -0.348 -0.356
O3 0.387 -1.567 0.540
C4 -0.086 0.677 -0.311
C5 -1.513 0.452 0.190
O6 -2.108 -0.689 -0.381
N7 0.448 1.923 0.227
H8 2.548 -1.150 -0.119
H9 -0.123 0.765 -1.401
H10 -1.498 0.403 1.288
H11 -2.107 1.320 -0.094
H12 -1.644 -1.449 -0.009
H13 1.352 2.132 -0.178
H14 0.571 1.855 1.231

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34881.21661.52872.50322.91112.50161.87742.11952.77853.43482.58092.74692.7066
O21.34882.25552.37833.70164.18172.84470.96892.66323.99004.49573.87922.58533.0964
O31.21662.25552.44612.79402.80023.50412.29783.07622.82653.86702.10683.88983.4960
C41.52872.37832.44611.52922.44151.45823.21181.09402.15082.13192.65292.05002.0490
C52.50323.70162.79401.52921.40852.45154.37682.13621.09881.08951.91583.34162.7194
O62.91114.18172.80022.44151.40853.70504.68632.66392.08592.02980.96454.46934.0314
N72.50162.84473.50411.45822.45153.70503.73822.07792.68762.64493.97491.01241.0139
H81.87740.96892.29783.21184.37684.68633.73823.52774.55645.27024.20413.49433.8426
H92.11952.66323.07621.09402.13622.66392.07793.52773.04192.44023.02502.35392.9324
H102.77853.99002.82652.15081.09882.08592.68764.55643.04191.76712.26543.64172.5286
H113.43484.49573.86702.13191.08952.02982.64495.27022.44021.76712.80843.55423.0357
H122.58093.87922.10682.65291.91580.96453.97494.20413.02502.26542.80844.67204.1667
H132.74692.58533.88982.05003.34164.46931.01243.49432.35393.64173.55424.67201.6347
H142.70663.09643.49602.04902.71944.03141.01393.84262.93242.52863.03574.16671.6347

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.057 C1 C4 C5 109.889
C1 C4 N7 113.739 C1 C4 H9 106.649
O2 C1 O3 123.010 O2 C1 C4 111.333
O3 C1 C4 125.619 C4 C5 O6 112.362
C4 C5 H10 108.746 C4 C5 H11 107.817
C4 N7 H13 110.864 C4 N7 H14 110.673
C5 C4 N7 110.273 C5 C4 H9 107.895
C5 O6 H12 106.163 O6 C5 H10 112.003
O6 C5 H11 108.012 N7 C4 H9 108.159
H10 C5 H11 107.710 H13 N7 H14 107.561
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability