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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: B97D3/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at B97D3/TZVP
 hartrees
Energy at 0K-595.921529
Energy at 298.15K-595.934169
HF Energy-595.921529
Nuclear repulsion energy285.882742
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3047 3003 46.47      
2 A' 3001 2958 49.83      
3 A' 2977 2934 54.99      
4 A' 2975 2932 30.30      
5 A' 2966 2923 19.94      
6 A' 2954 2912 5.97      
7 A' 2618 2580 14.20      
8 A' 1488 1466 7.49      
9 A' 1478 1457 0.20      
10 A' 1467 1446 1.17      
11 A' 1463 1442 1.07      
12 A' 1459 1438 0.49      
13 A' 1393 1373 2.35      
14 A' 1374 1354 0.16      
15 A' 1352 1332 10.29      
16 A' 1290 1271 8.37      
17 A' 1227 1209 23.14      
18 A' 1116 1099 3.15      
19 A' 1045 1030 0.40      
20 A' 1038 1023 1.15      
21 A' 1003 988 0.19      
22 A' 891 878 0.58      
23 A' 841 829 1.00      
24 A' 709 699 5.09      
25 A' 434 428 1.57      
26 A' 343 338 0.30      
27 A' 244 240 1.26      
28 A' 114 112 1.07      
29 A" 3056 3012 43.72      
30 A" 3042 2998 66.67      
31 A" 3017 2974 30.09      
32 A" 2999 2956 7.56      
33 A" 2979 2936 1.02      
34 A" 1477 1456 7.21      
35 A" 1314 1296 0.25      
36 A" 1312 1293 0.66      
37 A" 1265 1247 0.20      
38 A" 1200 1183 0.25      
39 A" 1062 1047 2.13      
40 A" 953 939 0.10      
41 A" 833 821 1.42      
42 A" 754 743 0.15      
43 A" 728 718 3.87      
44 A" 246 242 0.02      
45 A" 159 157 11.93      
46 A" 136 134 2.85      
47 A" 81 80 2.88      
48 A" 53 52 2.92      

Unscaled Zero Point Vibrational Energy (zpe) 34484.5 cm-1
Scaled (by 0.9856) Zero Point Vibrational Energy (zpe) 33988.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/TZVP
ABC
0.47475 0.02642 0.02562

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/TZVP

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.440 1.664 0.000
H2 -3.677 1.114 0.000
C3 -1.499 0.066 0.000
H4 -1.777 -0.508 0.890
H5 -1.777 -0.508 -0.890
C6 0.000 0.357 0.000
H7 0.253 0.961 -0.881
H8 0.253 0.961 0.881
C9 0.839 -0.926 0.000
H10 0.579 -1.533 0.880
H11 0.579 -1.533 -0.880
C12 2.348 -0.660 0.000
H13 2.606 -0.052 0.879
H14 2.606 -0.052 -0.879
C15 3.182 -1.944 0.000
H16 2.964 -2.555 0.885
H17 2.964 -2.555 -0.885
H18 4.256 -1.725 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.35381.85492.43972.43972.76862.92012.92014.17904.48474.48475.32255.40245.40246.68026.91346.91347.5046
H21.35382.41742.65282.65283.75474.03144.03144.95595.08905.08906.28126.45116.45117.51007.63947.63948.4257
C31.85492.41741.09481.09481.52722.15652.15652.53992.76572.76573.91514.20014.20015.09415.25135.25136.0269
H42.43972.65281.09481.77992.16713.06892.50632.79422.56873.11934.22234.40664.74835.23825.16405.46076.2177
H52.43972.65281.09481.77992.16712.50633.06892.79423.11932.56874.22234.74834.40665.23825.46075.16406.2177
C62.76863.75471.52722.16712.16711.09841.09841.53292.16352.16352.55852.78062.78063.92624.24834.24834.7372
H72.92014.03142.15653.06892.50631.09841.76242.16403.07102.51592.79133.10812.56174.21804.77844.43994.8997
H82.92014.03142.15652.50633.06891.09841.76242.16402.51593.07102.79132.56173.10814.21804.43994.77844.8997
C94.17904.95592.53992.79422.79421.53292.16402.16401.10011.10011.53272.15892.15892.55432.82032.82033.5088
H104.48475.08902.76572.56873.11932.16353.07102.51591.10011.75972.16072.51113.06572.77832.59543.13883.7857
H114.48475.08902.76573.11932.56872.16352.51593.07101.10011.75972.16073.06572.51112.77833.13882.59543.7857
C125.32256.28123.91514.22234.22232.55852.79132.79131.53272.16072.16071.09921.09921.53112.18062.18062.1847
H135.40246.45114.20014.40664.74832.78063.10812.56172.15892.51113.06571.09921.75772.16402.52823.08292.5080
H145.40246.45114.20014.74834.40662.78062.56173.10812.15893.06572.51111.09921.75772.16403.08292.52822.5080
C156.68027.51005.09415.23825.23823.92624.21804.21802.55432.77832.77831.53112.16402.16401.09731.09731.0961
H166.91347.63945.25135.16405.46074.24834.77844.43992.82032.59543.13882.18062.52823.08291.09731.77081.7720
H176.91347.63945.25135.46075.16404.24834.43994.77842.82033.13882.59542.18063.08292.52821.09731.77081.7720
H187.50468.42576.02696.21776.21774.73724.89974.89973.50883.78573.78572.18472.50802.50801.09611.77201.7720

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 108.862 S1 C3 H5 108.862
S1 C3 C6 109.515 H2 S1 C3 96.522
C3 C6 H7 109.352 C3 C6 H8 109.352
C3 C6 C9 112.199 H4 C3 H5 108.757
H4 C3 C6 110.404 H5 C3 C6 110.404
C6 C9 H10 109.412 C6 C9 H11 109.412
C6 C9 C12 113.147 H7 C6 H8 106.688
H7 C6 C9 109.548 H8 C6 C9 109.548
C9 C12 H13 109.119 C9 C12 H14 109.119
C9 C12 C15 112.961 H10 C9 H11 106.222
H10 C9 C12 109.206 H11 C9 C12 109.206
C12 C15 H16 111.046 C12 C15 H17 111.046
C12 C15 H18 111.439 H13 C12 H14 106.175
H13 C12 C15 109.619 H14 C12 C15 109.619
H16 C15 H17 107.585 H16 C15 H18 107.776
H17 C15 H18 107.776
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.126      
2 H 0.082      
3 C -0.240      
4 H 0.132      
5 H 0.132      
6 C -0.193      
7 H 0.107      
8 H 0.107      
9 C -0.207      
10 H 0.090      
11 H 0.090      
12 C -0.156      
13 H 0.095      
14 H 0.095      
15 C -0.326      
16 H 0.102      
17 H 0.102      
18 H 0.117      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.375 -1.691 0.000 1.732
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -45.564 3.646 0.000
y 3.646 -52.079 0.000
z 0.000 0.000 -48.683
Traceless
 xyz
x 4.817 3.646 0.000
y 3.646 -4.955 0.000
z 0.000 0.000 0.139
Polar
3z2-r20.277
x2-y26.514
xy3.646
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.432 -2.242 0.000
y -2.242 12.237 0.000
z 0.000 0.000 9.613


<r2> (average value of r2) Å2
<r2> 414.855
(<r2>)1/2 20.368