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All results from a given calculation for C5H4N4 (purine)

using model chemistry: BLYP/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at BLYP/TZVP
 hartrees
Energy at 0K-411.962282
Energy at 298.15K-411.969871
HF Energy-411.962282
Nuclear repulsion energy409.402272
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3529 3520 67.55      
2 A' 3165 3157 0.59      
3 A' 3103 3095 13.82      
4 A' 3088 3080 14.94      
5 A' 1565 1561 57.51      
6 A' 1531 1527 59.08      
7 A' 1445 1441 21.69      
8 A' 1425 1421 2.98      
9 A' 1370 1366 40.91      
10 A' 1357 1353 15.57      
11 A' 1311 1308 29.64      
12 A' 1257 1254 57.30      
13 A' 1234 1231 10.28      
14 A' 1218 1215 44.14      
15 A' 1159 1156 5.97      
16 A' 1083 1081 6.15      
17 A' 1031 1028 19.08      
18 A' 915 912 0.71      
19 A' 878 876 11.30      
20 A' 777 775 10.35      
21 A' 641 639 0.31      
22 A' 554 552 2.61      
23 A' 432 431 12.20      
24 A" 934 932 0.14      
25 A" 886 884 13.39      
26 A" 819 817 10.38      
27 A" 761 759 8.12      
28 A" 640 638 3.23      
29 A" 597 595 25.67      
30 A" 496 495 86.64      
31 A" 394 393 1.81      
32 A" 229 229 0.34      
33 A" 213 213 3.73      

Unscaled Zero Point Vibrational Energy (zpe) 20017.3 cm-1
Scaled (by 0.9975) Zero Point Vibrational Energy (zpe) 19967.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/TZVP
ABC
0.13599 0.05766 0.04049

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/TZVP

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.830 -1.265 0.000
C2 -2.124 0.067 0.000
N3 -1.282 1.107 0.000
C4 0.000 0.710 0.000
C5 0.454 -0.632 0.000
C6 -0.543 -1.620 0.000
N7 1.847 -0.695 0.000
C8 2.205 0.574 0.000
N9 1.140 1.480 0.000
H10 -3.186 0.307 0.000
H11 -0.313 -2.687 0.000
H12 3.237 0.907 0.000
H13 1.183 2.493 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36422.43402.69222.37011.33553.72104.43454.04422.07592.07935.51234.8167
C21.36421.33802.21952.67152.31314.04414.35943.55731.08833.29655.42644.1018
N32.43401.33801.34212.45682.82573.61093.52792.45092.06513.91554.52302.8282
C42.69222.21951.34211.41622.39262.32072.20961.37603.21143.41113.24262.1401
C52.37012.67152.45681.41621.40401.39462.12612.22023.75912.19383.17953.2087
C61.33552.31312.82572.39261.40402.56273.51673.52773.27151.09094.54644.4610
N73.72104.04413.61092.32071.39462.56271.31852.28705.13202.93832.12053.2567
C84.43454.35943.52792.20962.12613.51671.31851.39845.39804.12011.08362.1747
N94.04423.55732.45091.37602.22023.52772.28701.39844.48244.41302.17321.0142
H102.07591.08832.06513.21143.75913.27155.13205.39804.48244.14956.45054.8855
H112.07933.29653.91553.41112.19381.09092.93834.12014.41304.14955.05125.3918
H125.51235.42644.52303.24263.17954.54642.12051.08362.17326.45055.05122.5950
H134.81674.10182.82822.14013.20874.46103.25672.17471.01424.88555.39182.5950

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.510 N1 C2 H10 115.195
N1 C6 C5 119.778 N1 C6 H11 117.602
C2 N1 C6 117.914 C2 N3 C4 111.819
N3 C2 H10 116.294 N3 C4 C5 125.903
N3 C4 N9 128.761 C4 C5 C6 116.075
C4 C5 N7 111.308 C4 N9 C8 105.579
C4 N9 H13 126.450 C5 C4 N9 105.335
C5 C6 H11 122.620 C5 N7 C8 103.158
C6 C5 N7 132.617 N7 C8 N9 114.620
N7 C8 H12 123.662 C8 N9 H13 127.971
N9 C8 H12 121.718
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.074      
2 C -0.058      
3 N -0.048      
4 C -0.106      
5 C -0.022      
6 C -0.123      
7 N -0.052      
8 C -0.003      
9 N -0.115      
10 H 0.114      
11 H 0.114      
12 H 0.127      
13 H 0.246      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.244 2.961 0.000 3.715
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.776 6.209 0.000
y 6.209 -48.718 0.000
z 0.000 0.000 -52.493
Traceless
 xyz
x -1.171 6.209 0.000
y 6.209 3.416 0.000
z 0.000 0.000 -2.246
Polar
3z2-r2-4.491
x2-y2-3.058
xy6.209
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 16.715 1.441 0.000
y 1.441 13.039 0.000
z 0.000 0.000 6.319


<r2> (average value of r2) Å2
<r2> 258.171
(<r2>)1/2 16.068