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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B97D3/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B97D3/TZVP
 hartrees
Energy at 0K-411.809603
Energy at 298.15K-411.817235
HF Energy-411.809603
Nuclear repulsion energy410.887560
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3589 3537 69.07      
2 A' 3189 3143 0.82      
3 A' 3125 3080 16.09      
4 A' 3111 3066 17.85      
5 A' 1596 1573 61.09      
6 A' 1560 1538 64.61      
7 A' 1465 1444 22.25      
8 A' 1442 1421 1.90      
9 A' 1389 1369 37.88      
10 A' 1371 1351 18.13      
11 A' 1330 1311 38.54      
12 A' 1275 1257 54.78      
13 A' 1253 1235 1.10      
14 A' 1243 1225 53.42      
15 A' 1172 1155 5.79      
16 A' 1102 1087 5.84      
17 A' 1043 1028 20.16      
18 A' 929 916 0.81      
19 A' 890 877 11.39      
20 A' 792 781 10.25      
21 A' 652 642 0.26      
22 A' 562 554 2.72      
23 A' 436 430 12.32      
24 A" 938 925 0.10      
25 A" 889 876 12.40      
26 A" 822 810 9.93      
27 A" 764 753 8.28      
28 A" 646 636 3.41      
29 A" 600 591 24.72      
30 A" 494 487 87.31      
31 A" 392 386 1.76      
32 A" 229 225 0.29      
33 A" 210 207 4.03      

Unscaled Zero Point Vibrational Energy (zpe) 20248.9 cm-1
Scaled (by 0.9856) Zero Point Vibrational Energy (zpe) 19957.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/TZVP
ABC
0.13710 0.05804 0.04078

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/TZVP

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.843 -1.243 0.000
C2 -2.128 0.074 0.000
N3 -1.267 1.106 0.000
C4 0.000 0.704 0.000
C5 0.449 -0.642 0.000
C6 -0.554 -1.611 0.000
N7 1.840 -0.693 0.000
C8 2.214 0.566 0.000
N9 1.154 1.461 0.000
H10 -3.185 0.334 0.000
H11 -0.330 -2.677 0.000
H12 3.241 0.911 0.000
H13 1.199 2.470 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34772.41942.68132.37031.34113.72404.44234.03672.07072.08505.52184.8009
C21.34771.34462.21942.67532.30634.04144.36993.56281.08833.28695.43394.1005
N32.41941.34461.32902.45002.80963.59003.52252.44612.06793.89804.51192.8181
C42.68132.21941.32901.41922.38052.31012.21841.37993.20633.39743.24762.1350
C52.37032.67532.45001.41921.39481.39122.13832.21803.76322.17943.19443.2014
C61.34112.30632.80962.38051.39482.56353.52123.51483.27231.08944.55634.4420
N73.72404.04143.59002.31011.39122.56351.31312.26095.12862.94022.12983.2275
C84.44234.36993.52252.21842.13833.52121.31311.38815.40404.12171.08342.1581
N94.03673.56282.44611.37992.21803.51482.26091.38814.48254.39642.15871.0101
H102.07071.08832.06793.20633.76323.27235.12865.40404.48254.14976.45174.8770
H112.08503.28693.89803.39742.17941.08942.94024.12174.39644.14975.06235.3700
H125.52185.43394.51193.24763.19444.55632.12981.08342.15876.45175.06232.5689
H134.80094.10052.81812.13503.20144.44203.22752.15811.01014.87705.37002.5689

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.956 N1 C2 H10 116.028
N1 C6 C5 120.064 N1 C6 H11 117.775
C2 N1 C6 118.124 C2 N3 C4 112.220
N3 C2 H10 116.015 N3 C4 C5 126.089
N3 C4 N9 129.100 C4 C5 C6 115.546
C4 C5 N7 110.566 C4 N9 C8 106.542
C4 N9 H13 125.877 C5 C4 N9 104.812
C5 C6 H11 122.161 C5 N7 C8 104.461
C6 C5 N7 133.888 N7 C8 N9 113.619
N7 C8 H12 125.149 C8 N9 H13 127.581
N9 C8 H12 121.231
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.043      
2 C -0.069      
3 N -0.033      
4 C -0.164      
5 C 0.053      
6 C -0.184      
7 N -0.029      
8 C -0.025      
9 N -0.060      
10 H 0.101      
11 H 0.093      
12 H 0.115      
13 H 0.245      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.243 2.966 0.000 3.718
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.896 6.212 0.000
y 6.212 -47.920 0.000
z 0.000 0.000 -51.899
Traceless
 xyz
x -0.987 6.212 0.000
y 6.212 3.478 0.000
z 0.000 0.000 -2.491
Polar
3z2-r2-4.982
x2-y2-2.977
xy6.212
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 16.488 1.415 0.000
y 1.415 12.843 0.000
z 0.000 0.000 6.234


<r2> (average value of r2) Å2
<r2> 256.119
(<r2>)1/2 16.004